RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MGAT2Q10469 447 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 PLAC9Q5JTB6 97 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 AMELYQ99218 206 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 ACTR3CQ9C0K3 210 aaPredicted RBP13.57□□□□□ -0.24
SHH-201ENST00000297261 HEXA-AS1Q9H8Q6 139 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 OBP2BQ9NPH6 170 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 PATE3B3GLJ2 98 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 M0R143 59 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 NXPH2O95156 264 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 ACAA2P42765 397 aaKnown RBP13.57□□□□□ -0.24
SHH-201ENST00000297261 LPAR6P43657 344 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 DMWDQ09019 674 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 TMEM267Q0VDI3 215 aaPredicted RBP13.57□□□□□ -0.24
SHH-201ENST00000297261 ABHD17BQ5VST6 288 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 ZNF880Q6PDB4 577 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 C16orf47Q6ZP98 133 aaPredicted RBP13.57□□□□□ -0.24
SHH-201ENST00000297261 OSR2Q8N2R0 312 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 OR10P1Q8NGE3 313 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 SOSTQ9BQB4 213 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 VAMP8Q9BV40 100 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 MSL2Q9HCI7 577 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 DTX4Q9Y2E6 619 aa13.57□□□□□ -0.24
SHH-201ENST00000297261 TP53BP1Q12888 1972 aaPredicted RBP13.57□□□□□ -0.24
SHH-201ENST00000297261 SMIM10L1P0DMW3 83 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 ZBTB25P24278 435 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 GALR1P47211 349 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 TMEM241Q24JQ0 296 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 MPV17LQ2QL34 196 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 BTNL8Q6UX41 500 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 MRGPREQ86SM8 312 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 PP6455Q8WZ26 134 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 SMIM10Q96HG1 83 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 GPR61Q9BZJ8 451 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 GSN-AS1Q9NRJ2 163 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 RCC2Q9P258 522 aaKnown RBP13.56□□□□□ -0.24
SHH-201ENST00000297261 ZNF318Q5VUA4 2279 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 UBE2L5PA0A1B0GUS4 154 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 CLEC18AA5D8T8 446 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 DHRS11Q6UWP2 260 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 D2HGDHQ8N465 521 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 CLEC18CQ8NCF0 446 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 NTNG2Q96CW9 530 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 ICAM5Q9UMF0 924 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 TRAPPC1Q9Y5R8 145 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 IGLV3-19P01714 112 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 CTXN2P0C2S0 81 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 PKIAP61925 76 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 SUMO1P63165 101 aaKnown RBP13.56□□□□□ -0.24
SHH-201ENST00000297261 LYZL2Q7Z4W2 148 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 CARFQ8N187 725 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 SLC25A45Q8N413 288 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 SLC25A43Q8WUT9 341 aaPredicted RBP13.56□□□□□ -0.24
SHH-201ENST00000297261 A0A1B0GTQ1 180 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 SNRNP200O75643 2136 aaKnown RBP13.56□□□□□ -0.24
SHH-201ENST00000297261 BMP5P22003 454 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 OR2AE1Q8NHA4 323 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 HIST1H2BAQ96A08 127 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 TMEM74BQ9NUR3 256 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 IL17BQ9UHF5 180 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 APC2O95996 2303 aa13.56□□□□□ -0.24
SHH-201ENST00000297261 ELOA3CA0A087WX78 387 aaPredicted RBP13.55□□□□□ -0.24
SHH-201ENST00000297261 C20orf202A1L168 122 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 ANKUB1A6NFN9 424 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 COX5AP20674 150 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 ATG4DQ86TL0 474 aaPredicted RBP13.55□□□□□ -0.24
SHH-201ENST00000297261 A0A1W2PR80 420 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 MAP1LC3B2A6NCE7 125 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 ACTL6AO96019 429 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 TRGC2P03986 189 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 SULT1A2P50226 295 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 ZNF92Q03936 586 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 IL13RA2Q14627 380 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 OR5AS1Q8N127 324 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 MAP1LC3BQ9GZQ8 125 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 F6UZH7 168 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 DEGS1O15121 323 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 DHHO43323 396 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 SSR4P51571 173 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 FOXL2P58012 376 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 SELENOVP59797 346 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 SLC35G3Q8N808 338 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 OR4A16Q8NH70 328 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 IER2Q9BTL4 223 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 CALHM2Q9HA72 323 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 MCTS1Q9ULC4 181 aaKnown RBP13.55□□□□□ -0.24
SHH-201ENST00000297261 LTBP2Q14767 1821 aa13.55□□□□□ -0.24
SHH-201ENST00000297261 A0A1W2PPC1 479 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 PTBP3O95758 552 aaKnown RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 ETFRF1Q6IPR1 90 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 H2BFWTQ7Z2G1 175 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 NANOS1Q8WY41 292 aaKnown RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 DOCK8Q8NF50 2099 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 A0A1B0GV90 55 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 A0A1W2PP11 408 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 PQLC2LA1A4F0 135 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 ACAA1P09110 424 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 PPP1CBP62140 327 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 HIST1H3AP68431 136 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 SLC26A10Q8NG04 563 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 KISS1RQ969F8 398 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms