RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HS3ST6Q96QI5 342 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 FAM117AQ9C073 453 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 TPT1P13693 172 aaKnown RBP17.29■□□□□ 0.36
VPS53-201ENST00000291074 ECI1P42126 302 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 MALLQ13021 153 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 PRDX4Q13162 271 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 PHLDA2Q53GA4 152 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 C5orf24Q7Z6I8 188 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 SLAMF9Q96A28 289 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 REPIN1Q9BWE0 567 aaKnown RBP17.29■□□□□ 0.36
VPS53-201ENST00000291074 ZNF442Q9H7R0 627 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 OR2S2Q9NQN1 319 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 PCDHB10Q9UN67 800 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 A0A1B0GW55 424 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 RPL36A-HNRNPH2H7BZ11 118 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 SP1P08047 785 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 DUX4L2P0CJ85 424 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 DUX4L3P0CJ86 424 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 DUX4L4P0CJ87 422 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 DUX4L5P0CJ88 424 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 DUX4L6P0CJ89 424 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 DUX4L7P0CJ90 424 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 ZNF728P0DKX0 622 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 FCGR2CP31995 323 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 ZNF585AQ6P3V2 769 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 BAP18Q8IXM2 172 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 HPSE2Q8WWQ2 592 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 DUX4Q9UBX2 424 aa17.29■□□□□ 0.36
VPS53-201ENST00000291074 BCL3P20749 454 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 GPM6AP51674 278 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 PLEKHN1Q494U1 663 aaPredicted RBP17.28■□□□□ 0.36
VPS53-201ENST00000291074 DHRS11Q6UWP2 260 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 IL22RA1Q8N6P7 574 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 LOXL4Q96JB6 756 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 C12orf49Q9H741 205 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 IL36RNQ9UBH0 155 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 PCP4L1A6NKN8 68 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 GGNBP1Q5YKI7 109 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 MRPL21Q7Z2W9 205 aaKnown RBP17.28■□□□□ 0.36
VPS53-201ENST00000291074 SLC30A7Q8NEW0 376 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 AQP10Q96PS8 301 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 PRSS50Q9UI38 385 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 STARD10Q9Y365 291 aa17.28■□□□□ 0.36
VPS53-201ENST00000291074 NME2P1O60361 137 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 APOC3P02656 99 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 NME2P22392 152 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 HAAOP46952 286 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 ARHGDIBP52566 201 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 RAB1AP62820 205 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 ESPL1Q14674 2120 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.27■□□□□ 0.36
VPS53-201ENST00000291074 MDS2Q8NDY4 140 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 DEFB127Q9H1M4 99 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 OR51B6Q9H340 312 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 ZNF286AQ9HBT8 521 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 ATPIF1Q9UII2 106 aa17.27■□□□□ 0.36
VPS53-201ENST00000291074 PQLC2LA1A4F0 135 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 OR5AC1P0C628 307 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 TGIF1Q15583 401 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 ATRAIDQ6UW56 229 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 BPIFCQ8NFQ6 507 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 OR11L1Q8NGX0 322 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 TECTBQ96PL2 329 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 DNTTIP1Q9H147 329 aa17.27■□□□□ 0.35
VPS53-201ENST00000291074 FUT3P21217 361 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 SPEM2Q0P670 501 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 ABCA11PQ4W5N1 156 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 OR2A2Q6IF42 318 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 RTN4IP1Q8WWV3 396 aaPredicted RBP17.26■□□□□ 0.35
VPS53-201ENST00000291074 SLC5A7Q9GZV3 580 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 TNRC6AQ8NDV7 1962 aaKnown RBP17.26■□□□□ 0.35
VPS53-201ENST00000291074 ZNF724A8MTY0 619 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 OR5L1Q8NGL2 311 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 NARS2Q96I59 477 aaKnown RBP17.26■□□□□ 0.35
VPS53-201ENST00000291074 NAA60Q9H7X0 242 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 KLF13Q9Y2Y9 288 aaPredicted RBP17.26■□□□□ 0.35
VPS53-201ENST00000291074 MEMO1Q9Y316 297 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 ASPMQ8IZT6 3477 aa17.26■□□□□ 0.35
VPS53-201ENST00000291074 C3orf80F5H4A9 247 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 SCGB1D2O95969 90 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 PET100P0DJ07 73 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 AKR1C2P52895 323 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 AKR1C1Q04828 323 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 HIKESHIQ53FT3 197 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 MCEMP1Q8IX19 187 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 CNTNAP3BQ96NU0 1288 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 CNTNAP3Q9BZ76 1288 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 ZNF552Q9H707 407 aaPredicted RBP17.25■□□□□ 0.35
VPS53-201ENST00000291074 TTC28Q96AY4 2481 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 ARGFXA6NJG6 315 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 NUPL2O15504 423 aaKnown RBP17.25■□□□□ 0.35
VPS53-201ENST00000291074 FGF16O43320 207 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 IGSF11Q5DX21 431 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 RNFT1Q5M7Z0 435 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 VASH2Q86V25 355 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 APOBEC3DQ96AK3 386 aaPredicted RBP17.25■□□□□ 0.35
VPS53-201ENST00000291074 AIFM2Q9BRQ8 373 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 SLC2A9Q9NRM0 540 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 LSM5Q9Y4Y9 91 aaKnown RBP17.25■□□□□ 0.35
VPS53-201ENST00000291074 MED12LQ86YW9 2145 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms