RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 AHRRA9YTQ3 701 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 CTAG2O75638 210 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 SEBOXQ9HB31 216 aaPredicted RBP16.33■□□□□ 0.2
PCDH1-201ENST00000287008 SDK2Q58EX2 2172 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 IGHV1-45A0A0A0MS14 117 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 XKRY2A2RUG3 117 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 OR4A8P0C604 315 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 OR2D2Q9H210 308 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 TIMM9Q9Y5J7 89 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF785A8K8V0 405 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 OIP5O43482 229 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 MRPS11P82912 194 aaKnown RBP16.33■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF787Q6DD87 383 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 ASB13Q8WXK3 278 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 DPF1Q92782 380 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 PIK3IP1Q96FE7 263 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 WDR89Q96FK6 387 aaPredicted RBP16.33■□□□□ 0.2
PCDH1-201ENST00000287008 WDR13Q9H1Z4 485 aa16.33■□□□□ 0.2
PCDH1-201ENST00000287008 A0A1W2PN81 502 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 FAM157AC9JC47 383 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 RBP4P02753 201 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 GZMHP20718 246 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 CD80P33681 288 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 CHRNA7P36544 502 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 SLC25A30Q5SVS4 291 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 CCDC190Q86UF4 302 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 FKBP11Q9NYL4 201 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 SLC25A4P12235 298 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 FGF7P21781 194 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 CSRP2Q16527 193 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF528Q3MIS6 628 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 DMKNQ6E0U4 476 aaPredicted RBP16.32■□□□□ 0.2
PCDH1-201ENST00000287008 HIST2H3AQ71DI3 136 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 OR5B3Q8NH48 314 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 C1RLQ9NZP8 487 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 RCL1Q9Y2P8 373 aaKnown RBP16.32■□□□□ 0.2
PCDH1-201ENST00000287008 LNP1A1A4G5 178 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 WISP3O95389 354 aaPredicted RBP16.32■□□□□ 0.2
PCDH1-201ENST00000287008 IGHV3-13P01766 116 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 IGHV3-7P01780 117 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 CD37P11049 281 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 ID4P47928 161 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 SSX1Q16384 188 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 H3F3CQ6NXT2 135 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF485Q8NCK3 441 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 OR52B4Q8NGK2 314 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 VSTM2AQ8TAG5 236 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 MITD1Q8WV92 249 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 CLN8Q9UBY8 286 aa16.32■□□□□ 0.2
PCDH1-201ENST00000287008 CYTIPO60759 359 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 NEIL1Q96FI4 390 aaPredicted RBP16.31■□□□□ 0.2
PCDH1-201ENST00000287008 ANGPTL4Q9BY76 406 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 RASL12Q9NYN1 266 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 ATXN7O15265 892 aaPredicted RBP16.31■□□□□ 0.2
PCDH1-201ENST00000287008 PRSS23O95084 383 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 FGF2P09038 288 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 SPINK2P20155 84 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 OPRK1P41145 380 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 ACAA2P42765 397 aaKnown RBP16.31■□□□□ 0.2
PCDH1-201ENST00000287008 SLC52A3Q9NQ40 469 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 TREM2Q9NZC2 230 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 OR5AP2Q8NGF4 316 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 RNF133Q8WVZ7 376 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 TCEAL7Q9BRU2 100 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 MSL2Q9HCI7 577 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 MDP1Q86V88 176 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 OR10AC1Q8NH08 325 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 RPUSD4Q96CM3 377 aaKnown RBP16.31■□□□□ 0.2
PCDH1-201ENST00000287008 FAM122AQ96E09 287 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 TVP23CQ96ET8 276 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 AKIP1Q9NQ31 210 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 GAB2Q9UQC2 676 aa16.31■□□□□ 0.2
PCDH1-201ENST00000287008 F2RL2O00254 374 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 LANCL1O43813 399 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 NDUFB6O95139 128 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF205O95201 554 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 LTBRP36941 435 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 MMP16P51512 607 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 ENDOGQ14249 297 aaKnown RBP16.3■□□□□ 0.2
PCDH1-201ENST00000287008 ETFRF1Q6IPR1 90 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 UQCC1Q9NVA1 299 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 PRR33A8MZF0 331 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 ACSM6Q6P461 480 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 DGAT2L6Q6ZPD8 337 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 OR5A2Q8NGI9 324 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 TGIF2Q9GZN2 237 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 SLIRPQ9GZT3 109 aaKnown RBP16.3■□□□□ 0.2
PCDH1-201ENST00000287008 SLC35D1Q9NTN3 355 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 IL17BQ9UHF5 180 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 NTN1O95631 604 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 AKR1C3P42330 323 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 KIR2DS2P43631 304 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 RAB5CP51148 216 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 RBPMSQ93062 196 aaKnown RBP16.3■□□□□ 0.2
PCDH1-201ENST00000287008 MISP3Q96FF7 219 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 URGCP-MRPS24S4R325 110 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 SLC26A10Q8NG04 563 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF665Q9H7R5 613 aa16.3■□□□□ 0.2
PCDH1-201ENST00000287008 OR4C45A6NMZ5 311 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 PPP5D1E7EU14 171 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms