RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 HYAL1Q12794 435 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 SLC35E3Q7Z769 313 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 UBALD2Q8IYN6 164 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 LNP1A1A4G5 178 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 GPX2P18283 190 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 SUMO3P55854 103 aaPredicted RBP12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 SLC37A1P57057 533 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 FUNDC1Q8IVP5 155 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 ZNF441Q8N8Z8 693 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 NUDT16L1Q9BRJ7 211 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 JKAMPQ9P055 326 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 A0A0B4J293 547 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 DCTDP32321 178 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 COMPP49747 757 aaPredicted RBP12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 ZNF683Q8IZ20 524 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 ADAMTS17Q8TE56 1095 aa12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 CHD3Q12873 2000 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-201ENST00000263630 LPAR6P43657 344 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 WDR25Q64LD2 544 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 FANCMQ8IYD8 2048 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 CRHP06850 196 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 MRM1Q6IN84 353 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 OR2C3Q8N628 320 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 FLYWCH2Q96CP2 140 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 C19orf53Q9UNZ5 99 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 LOC389332A0A1B0GUA5 103 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 RAB1CQ92928 201 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 SLC25A19Q9HC21 320 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 MAS1LP35410 378 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 ROM1Q03395 351 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 PMCHL1Q16048 86 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 C10orf113Q5VZT2 155 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 RNF165Q6ZSG1 346 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 PMCHL2Q9BQD1 86 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 EBLN2Q6P2I7 272 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 OR4P4Q8NGL7 312 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 RLN3Q8WXF3 142 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 N4BP2Q86UW6 1770 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 TMEM189-UBE2V1I3L0A0 370 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 PYCARD-AS1I3L0S3 204 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 B4GALT1P15291 398 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 DYNLT3P51808 116 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 FAM3BP58499 235 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 SLC52A3Q9NQ40 469 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 SLC17A2O00624 439 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 NAT1P18440 290 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 KLF3P57682 345 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 CLDN10P78369 228 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 SSX8Q7RTT4 187 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 SARGQ9BW04 601 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 EMCNQ9ULC0 261 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 SAP30LQ9HAJ7 183 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 CYSLTR2Q9NS75 346 aa12.47□□□□□ -0.41
CCDC88A-201ENST00000263630 SRSF10O75494 262 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 CD27P26842 260 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 TNXAQ16473 311 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 SEC16AO15027 2179 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 MRC1P22897 1456 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 B4E171 279 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 PPT2Q9UMR5 302 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 ZAR1LA6NP61 321 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 SCAND1P57086 179 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 SOX4Q06945 474 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 PSG5Q15238 335 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 ASB5Q8WWX0 329 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 PAAF1Q9BRP4 392 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 HOXD9P28356 352 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 METRNLQ641Q3 311 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 Q7L0L9 218 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 TMEM99Q8N816 258 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 PARD6GQ9BYG4 376 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 ACER3Q9NUN7 267 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 B4GALT3O60512 393 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 PPICP45877 212 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 FGF8P55075 233 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 WDFY1Q8IWB7 410 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 VN1R2Q8NFZ6 395 aa12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 ERRFI1Q9UJM3 462 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-201ENST00000263630 HBZP02008 142 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 GZMKP49863 264 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 PWWP2BQ6NUJ5 590 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 SPICQ8N5J4 248 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 TMEM101Q96IK0 257 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 SNURFLB1AK76 121 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 IDSB3KWA1 339 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 LIMK1P53667 647 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 NTHL1P78549 312 aa12.46□□□□□ -0.42
CCDC88A-201ENST00000263630 TRAV38-1A0A0B4J264 116 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 SPRY1O43609 319 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 ICOSLGO75144 302 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 DLK1P80370 383 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 FABP5Q01469 135 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 PTOV1Q86YD1 416 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 ALKBH7Q9BT30 221 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 NEURL4Q96JN8 1562 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 FRG2CA6NGY1 282 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 MAMSTRQ6ZN01 415 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 OR2V1Q8NHB1 315 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 HMGN4O00479 90 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 HPXP02790 462 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms