RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ERVFC1-1P60608 527 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 PWWP2BQ6NUJ5 590 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 OR4D11Q8NGI4 311 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 CCL17Q92583 94 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 K7ESF4 209 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 F2RL2O00254 374 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 ADAM20O43506 726 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 GCSHP23434 173 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 SMAGPQ0VAQ4 97 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 SP6Q3SY56 376 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 PNPP00491 289 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 CPN1P15169 458 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 FCER1GP30273 86 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 VASH2Q86V25 355 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 NFAM1Q8NET5 270 aaPredicted RBP16.95■□□□□ 0.3
UPF1-201ENST00000262803 TMEM167BQ9NRX6 74 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 ERRFI1Q9UJM3 462 aaPredicted RBP16.95■□□□□ 0.3
UPF1-201ENST00000262803 GZMHP20718 246 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 MPGP29372 298 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 FAM60AQ9NP50 221 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 PCOLCE2Q9UKZ9 415 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 ICAM5Q9UMF0 924 aa16.95■□□□□ 0.3
UPF1-201ENST00000262803 ZNF320A2RRD8 509 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 OR2T8A6NH00 312 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 CST7O76096 145 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 PPP1R1AQ13522 171 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 GPR137Q96N19 417 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 SH2D2AQ9NP31 389 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 RNF7Q9UBF6 113 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 CTLA4P16410 223 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 SOX8P57073 446 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 PMP22Q01453 160 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 LRRTM1Q86UE6 522 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 NOL4LQ96MY1 436 aaPredicted RBP16.94■□□□□ 0.3
UPF1-201ENST00000262803 DMKNQ6E0U4 476 aaPredicted RBP16.94■□□□□ 0.3
UPF1-201ENST00000262803 MCM3APO60318 1980 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 IFNL4K9M1U5 179 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 SLC25A5P05141 298 aaKnown RBP16.94■□□□□ 0.3
UPF1-201ENST00000262803 GNG10P50151 68 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 HLXQ14774 488 aaPredicted RBP16.94■□□□□ 0.3
UPF1-201ENST00000262803 FFAR4Q5NUL3 377 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 LYRM7Q5U5X0 104 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 PRR27Q6MZM9 219 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 CCDC144NLQ6NUI1 221 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 LAMB2P55268 1798 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 ADAM11O75078 769 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 Q3ZCU0 254 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 WDR73Q6P4I2 378 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 DUSP18Q8NEJ0 188 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 RASL11BQ9BPW5 248 aa16.94■□□□□ 0.3
UPF1-201ENST00000262803 TO15178 435 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 B3GNTL1Q67FW5 361 aaPredicted RBP16.93■□□□□ 0.3
UPF1-201ENST00000262803 GMPPAQ96IJ6 420 aaPredicted RBP16.93■□□□□ 0.3
UPF1-201ENST00000262803 MBPP02686 304 aaPredicted RBP16.93■□□□□ 0.3
UPF1-201ENST00000262803 COL13A1Q5TAT6 717 aaPredicted RBP16.93■□□□□ 0.3
UPF1-201ENST00000262803 MRGPREQ86SM8 312 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 ZNF665Q9H7R5 613 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 ZNF230Q9UIE0 474 aaPredicted RBP16.93■□□□□ 0.3
UPF1-201ENST00000262803 NPIPB8E9PQR5 432 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 CELA2BP08218 269 aaPredicted RBP16.93■□□□□ 0.3
UPF1-201ENST00000262803 CD200P41217 278 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 IL24Q13007 206 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 LURAP1Q96LR2 239 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 RASL10BQ96S79 203 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 ARL2-SNX15V9GYD0 113 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 SPCS3P61009 180 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 MPV17LQ2QL34 196 aa16.93■□□□□ 0.3
UPF1-201ENST00000262803 MRM1Q6IN84 353 aaKnown RBP16.93■□□□□ 0.3
UPF1-201ENST00000262803 CTSDP07339 412 aaPredicted RBP16.92■□□□□ 0.3
UPF1-201ENST00000262803 PDCD1Q15116 288 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 C16orf47Q6ZP98 133 aaPredicted RBP16.92■□□□□ 0.3
UPF1-201ENST00000262803 SLC2A8Q9NY64 477 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 H3BMH7 237 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 HSBP1O75506 76 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 ZNF260Q3ZCT1 412 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 ETV3LQ6ZN32 361 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 DOLPP1Q86YN1 238 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 TMEM208Q9BTX3 173 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 LIPT2A6NK58 231 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 SLC6A1P30531 599 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 MRPS11P82912 194 aaKnown RBP16.92■□□□□ 0.3
UPF1-201ENST00000262803 ZNF770Q6IQ21 691 aaPredicted RBP16.92■□□□□ 0.3
UPF1-201ENST00000262803 OR2D2Q9H210 308 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 POMT1Q9Y6A1 747 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 ZP3P21754 424 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 OR3A4PP47883 348 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 LIMK1P53667 647 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 PTTG1IPP53801 180 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 PHYHIPLQ96FC7 376 aa16.92■□□□□ 0.3
UPF1-201ENST00000262803 TRDCB7Z8K6 153 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 LYZL6O75951 148 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 SEMG1P04279 462 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 MYPOPQ86VE0 399 aaPredicted RBP16.91■□□□□ 0.3
UPF1-201ENST00000262803 CLRN3Q8NCR9 226 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 MRM2Q9UI43 246 aaKnown RBP16.91■□□□□ 0.3
UPF1-201ENST00000262803 TEX50A0A1B0GTY4 177 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 MMP7P09237 267 aaPredicted RBP16.91■□□□□ 0.3
UPF1-201ENST00000262803 HOXA4Q00056 320 aaPredicted RBP16.91■□□□□ 0.3
UPF1-201ENST00000262803 GABRA6Q16445 453 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 FNDC7Q5VTL7 733 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms