RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SSX5O60225 188 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 LOXP28300 417 aaPredicted RBP17.03■□□□□ 0.32
CLN3-250ENST00000636839 DEFA1P59665 94 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 DEFA3P59666 94 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 KLF9Q13886 244 aaPredicted RBP17.03■□□□□ 0.32
CLN3-250ENST00000636839 FAAP20Q6NZ36 180 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 TOMM5Q8N4H5 51 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 GVQW1Q8N7I0 195 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 Q8NFD4 153 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 DYRK2Q92630 601 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 PECRQ9BY49 303 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 SLC22A4Q9H015 551 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 ZNF442Q9H7R0 627 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 NKIRAS2Q9NYR9 191 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 RABL2AQ9UBK7 228 aaPredicted RBP17.03■□□□□ 0.32
CLN3-250ENST00000636839 RABL2BQ9UNT1 228 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 NOP16Q9Y3C1 178 aaKnown RBP17.03■□□□□ 0.32
CLN3-250ENST00000636839 ABCA4P78363 2273 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 LRBAP50851 2863 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.03■□□□□ 0.32
CLN3-250ENST00000636839 A6NLC8 198 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 H7C417 338 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 MFNGO00587 321 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 WNT9BO14905 357 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 CYB5AP00167 134 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 PRKACAP17612 351 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 ELP2Q6IA86 826 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 FAAP24Q9BTP7 215 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 WDR13Q9H1Z4 485 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 MTFP1Q9UDX5 166 aa17.03■□□□□ 0.32
CLN3-250ENST00000636839 LYRM1O43325 122 aa17.02■□□□□ 0.32
CLN3-250ENST00000636839 TPPPO94811 219 aa17.02■□□□□ 0.32
CLN3-250ENST00000636839 RANBP1P43487 201 aa17.02■□□□□ 0.32
CLN3-250ENST00000636839 ZNF81P51508 661 aa17.02■□□□□ 0.32
CLN3-250ENST00000636839 SELENOVP59797 346 aa17.02■□□□□ 0.32
CLN3-250ENST00000636839 FGF12P61328 243 aa17.02■□□□□ 0.32
CLN3-250ENST00000636839 CHD3Q12873 2000 aaKnown RBP17.02■□□□□ 0.32
CLN3-250ENST00000636839 OR2V2Q96R30 315 aa17.02■□□□□ 0.32
CLN3-250ENST00000636839 TMEM210A6NLX4 147 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 IGHV1-46P01743 117 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 MT-ND4P03905 459 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 MELTFP08582 738 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 AGAP20933 346 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 SERPINF1P36955 418 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 MRPS10P82664 201 aaKnown RBP17.01■□□□□ 0.31
CLN3-250ENST00000636839 BEX5Q5H9J7 111 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 Q6ZNX1 250 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 TRAPPC6BQ86SZ2 158 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 SETD6Q8TBK2 473 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 C15orf40Q8WUR7 153 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 NUDT16L1Q9BRJ7 211 aaKnown RBP17.01■□□□□ 0.31
CLN3-250ENST00000636839 HDHD3Q9BSH5 251 aaPredicted RBP17.01■□□□□ 0.31
CLN3-250ENST00000636839 RNF115Q9Y4L5 304 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 RBBP9O75884 186 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 OR7C1O76099 320 aaPredicted RBP17.01■□□□□ 0.31
CLN3-250ENST00000636839 LPLP06858 475 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 KIR2DL3P43628 341 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 ERVK11-1P61568 191 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 PCGF3Q3KNV8 242 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 HACD4Q5VWC8 232 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 WDR82Q6UXN9 313 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 FAM58AQ8N1B3 248 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 OR4S1Q8NGB4 309 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 ST8SIA4Q92187 359 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 MRPS24Q96EL2 167 aaKnown RBP17.01■□□□□ 0.31
CLN3-250ENST00000636839 NRIP2Q9BQI9 281 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 SULT4A1Q9BR01 284 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 PLEKHJ1Q9NW61 149 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 TREM2Q9NZC2 230 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 CACNG2Q9Y698 323 aa17.01■□□□□ 0.31
CLN3-250ENST00000636839 KMT2BQ9UMN6 2715 aaPredicted RBP17■□□□□ 0.31
CLN3-250ENST00000636839 CACNA1DQ01668 2161 aa17■□□□□ 0.31
CLN3-250ENST00000636839 SCGNO76038 276 aa17■□□□□ 0.31
CLN3-250ENST00000636839 TFF1P04155 84 aa17■□□□□ 0.31
CLN3-250ENST00000636839 BTCP35070 178 aa17■□□□□ 0.31
CLN3-250ENST00000636839 PMELP40967 661 aa17■□□□□ 0.31
CLN3-250ENST00000636839 CCBE1Q6UXH8 406 aaPredicted RBP17■□□□□ 0.31
CLN3-250ENST00000636839 SPERTQ8NA61 448 aa17■□□□□ 0.31
CLN3-250ENST00000636839 OR4D10Q8NGI6 311 aa17■□□□□ 0.31
CLN3-250ENST00000636839 ITLN1Q8WWA0 313 aa17■□□□□ 0.31
CLN3-250ENST00000636839 EMG1Q92979 244 aaKnown RBP17■□□□□ 0.31
CLN3-250ENST00000636839 TLNRD1Q9H1K6 362 aa17■□□□□ 0.31
CLN3-250ENST00000636839 MMP28Q9H239 520 aa17■□□□□ 0.31
CLN3-250ENST00000636839 C1orf123Q9NWV4 160 aa17■□□□□ 0.31
CLN3-250ENST00000636839 CISD1Q9NZ45 108 aaKnown RBP17■□□□□ 0.31
CLN3-250ENST00000636839 USP9XQ93008 2570 aaPredicted RBP17■□□□□ 0.31
CLN3-250ENST00000636839 HRNRQ86YZ3 2850 aaPredicted RBP17■□□□□ 0.31
CLN3-250ENST00000636839 ANKRD20A5PA0PJZ0 165 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 PTTG1O95997 202 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 PGA5P0DJD9 388 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 CHATP28329 748 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 MST1LQ2TV78 715 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 TGIF2LYQ8IUE0 185 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 MEGF10Q96KG7 1140 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 ZNF230Q9UIE0 474 aaPredicted RBP16.99■□□□□ 0.31
CLN3-250ENST00000636839 MYO18BQ8IUG5 2567 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 hCG_1807616A0A1W2PRN6 198 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 HSPB6O14558 160 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 GSTP1P09211 210 aaKnown RBP16.99■□□□□ 0.31
CLN3-250ENST00000636839 CD200P41217 278 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms