RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 RBM14Q96PK6 669 aaKnown RBP11.67□□□□□ -0.54
PNKP-218ENST00000625299 PRR25Q96S07 402 aa11.67□□□□□ -0.54
PNKP-218ENST00000625299 MROQ9BYG7 248 aa11.67□□□□□ -0.54
PNKP-218ENST00000625299 CHST6Q9GZX3 395 aa11.67□□□□□ -0.54
PNKP-218ENST00000625299 REEP1Q9H902 201 aa11.67□□□□□ -0.54
PNKP-218ENST00000625299 ZMAT5Q9UDW3 170 aaKnown RBP11.67□□□□□ -0.54
PNKP-218ENST00000625299 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.67□□□□□ -0.54
PNKP-218ENST00000625299 STAB2Q8WWQ8 2551 aa11.67□□□□□ -0.54
PNKP-218ENST00000625299 BIRC6Q9NR09 4857 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 SACSQ9NZJ4 4579 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 FAM230AA0A1W2PPH8 454 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 TMEM82A0PJX8 343 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 ACOD1A6NK06 481 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 MMP23AO75900 390 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 AMY1AP04745 511 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 AMY2AP04746 511 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 MRPL3P09001 348 aaKnown RBP11.66□□□□□ -0.54
PNKP-218ENST00000625299 ALOX5APP20292 161 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 MFGE8Q08431 387 aaPredicted RBP11.66□□□□□ -0.54
PNKP-218ENST00000625299 GRK1Q15835 563 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 SNAPC1Q16533 368 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 ZNF829Q3KNS6 432 aaPredicted RBP11.66□□□□□ -0.54
PNKP-218ENST00000625299 NKAPLQ5M9Q1 402 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 BAIAP2L2Q6UXY1 529 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 OR2W3Q7Z3T1 314 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 KLHL30-AS1Q8NEE0 82 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 BBS1Q8NFJ9 593 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 OR10G2Q8NGC3 310 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 SNX22Q96L94 193 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 DUX3Q96PT4 197 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 CDRT15Q96T59 188 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 PAPOLBQ9NRJ5 636 aaKnown RBP11.66□□□□□ -0.54
PNKP-218ENST00000625299 DPM3Q9P2X0 92 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 IKZF2Q9UKS7 526 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 LINC00312Q9Y6C7 94 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 TENM2Q9NT68 2774 aa11.66□□□□□ -0.54
PNKP-218ENST00000625299 F8VVB4 439 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 F8VWA3 439 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 PRODHO43272 600 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 SASH3O75995 380 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 IGLV3-1P01715 115 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 GABRR1P24046 479 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 MPZP25189 248 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 ERVK11-1P61568 191 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 PRAMEF5Q5TYX0 476 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 LCN1P1Q5VSP4 162 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 CPOQ8IVL8 374 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 ABHD12Q8N2K0 398 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 SLAMF9Q96A28 289 aa11.65□□□□□ -0.54
PNKP-218ENST00000625299 NUFIP1Q9UHK0 495 aaKnown RBP11.65□□□□□ -0.54
PNKP-218ENST00000625299 PRR32B1ATL7 298 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 DLGAP1O14490 977 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 RAMP3O60896 148 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 IGHA1P01876 353 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 TTRP02766 147 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 ATP6V1B2P21281 511 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 PEX2P28328 305 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 PRDX6P30041 224 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 MYCNOSP40205 109 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 MAGEA2P43356 314 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 LUMP51884 338 aaPredicted RBP11.64□□□□□ -0.55
PNKP-218ENST00000625299 RIDAP52758 137 aaKnown RBP11.64□□□□□ -0.55
PNKP-218ENST00000625299 IL24Q13007 206 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 GINS1Q14691 196 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 PGAM4Q8N0Y7 254 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 ZNF596Q8TC21 504 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 EMG1Q92979 244 aaKnown RBP11.64□□□□□ -0.55
PNKP-218ENST00000625299 ITFG2Q969R8 447 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 CEP19Q96LK0 163 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 NOL4LQ96MY1 436 aaPredicted RBP11.64□□□□□ -0.55
PNKP-218ENST00000625299 CADM1Q9BY67 442 aaKnown RBP11.64□□□□□ -0.55
PNKP-218ENST00000625299 PKIBQ9C010 78 aa11.64□□□□□ -0.55
PNKP-218ENST00000625299 GAR1Q9NY12 217 aaKnown RBP11.64□□□□□ -0.55
PNKP-218ENST00000625299 HUWE1Q7Z6Z7 4374 aaKnown RBP11.63□□□□□ -0.55
PNKP-218ENST00000625299 LEUTXA8MZ59 168 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 M0QZK8 103 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 HAND1O96004 215 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 OR3A4PP47883 348 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 SNU13P55769 128 aaKnown RBP11.63□□□□□ -0.55
PNKP-218ENST00000625299 APOFQ13790 326 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 RBM39Q14498 530 aaKnown RBP11.63□□□□□ -0.55
PNKP-218ENST00000625299 SLC35D3Q5M8T2 416 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 CASC10Q5T4H9 136 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 BCL2L15Q5TBC7 163 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 SLX4IPQ5VYV7 408 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 TMEM42Q69YG0 159 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 OR2T5Q6IEZ7 315 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 DEGS2Q6QHC5 323 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 EGFL6Q8IUX8 553 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 ZNF679Q8IYX0 411 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 OR52N4Q8NGI2 321 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 OR2T29Q8NH02 315 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 MUC7Q8TAX7 377 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 FEVQ99581 238 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 YIPF3Q9GZM5 350 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 MYLK2Q9H1R3 596 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 CCDC134Q9H6E4 229 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 ARGLU1Q9NWB6 273 aaPredicted RBP11.63□□□□□ -0.55
PNKP-218ENST00000625299 MTCH1Q9NZJ7 389 aa11.63□□□□□ -0.55
PNKP-218ENST00000625299 IL36RNQ9UBH0 155 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms