RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 GREB1Q4ZG55 1949 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 IGHV2-70DA0A0C4DH43 119 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 CYR61O00622 381 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 NUDT21O43809 227 aaKnown RBP6.98□□□□□ -1.29
VPS11-209ENST00000622309 C8orf89P0DMQ9 161 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 BMP5P22003 454 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 CEBPDP49716 269 aaPredicted RBP6.98□□□□□ -1.29
VPS11-209ENST00000622309 HNRNPA3P51991 378 aaKnown RBP6.98□□□□□ -1.29
VPS11-209ENST00000622309 EFNA3P52797 238 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 SPOCK1Q08629 439 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 DUSP8Q13202 625 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 CLEC12BQ2HXU8 276 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 GAB4Q2WGN9 574 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 ARHGAP11BQ3KRB8 267 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 TMEM177Q53S58 311 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 TMEM41BQ5BJD5 291 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 TPRG1Q6ZUI0 275 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 SLC16A9Q7RTY1 509 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 TGIF2LYQ8IUE0 185 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 C2orf73Q8N5S3 287 aaPredicted RBP6.98□□□□□ -1.29
VPS11-209ENST00000622309 ZNF709Q8N972 641 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 ALG12Q9BV10 488 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 OR10A5Q9H207 317 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 ZNF576Q9H609 170 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 LAMTOR2Q9Y2Q5 125 aa6.98□□□□□ -1.29
VPS11-209ENST00000622309 DOCK6Q96HP0 2047 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 WDR1O75083 606 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 JMJD7P0C870 316 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 RPS4Y1P22090 263 aaKnown RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 LTBRP36941 435 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 PSG6Q00889 435 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 TMEM176BQ3YBM2 270 aaPredicted RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 PRR27Q6MZM9 219 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 UNQ5815/PRO19632Q6UWF5 114 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 MOGAT3Q86VF5 341 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 H1FOOQ8IZA3 346 aaPredicted RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 LILRA3Q8N6C8 439 aaPredicted RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 OR8G5Q8NG78 346 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 OR10S1Q8NGN2 331 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 VN1R17PQ8TDU5 208 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 ABHD3Q8WU67 409 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 BCL2L2Q92843 193 aaPredicted RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 APH1AQ96BI3 265 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 RBMXL1Q96E39 390 aaKnown RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 MS4A8Q9BY19 250 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 DHDHQ9UQ10 334 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 MTCL1Q9Y4B5 1905 aaKnown RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 MAP1LC3B2A6NCE7 125 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 RNF212BA8MTL3 300 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 KNG1P01042 644 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 HBE1P02100 147 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 CFPP27918 469 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 SSR2P43308 183 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 ZNF136P52737 540 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 FOXF1Q12946 379 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 ZNF260Q3ZCT1 412 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 DPPA3Q6W0C5 159 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 FBXW12Q6X9E4 464 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 Q6ZN92 141 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 TEX43Q6ZNM6 134 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 TMEM123Q8N131 208 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 DTWD2Q8NBA8 298 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 PTPMT1Q8WUK0 201 aaPredicted RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 FGGYQ96C11 551 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 MAP1LC3BQ9GZQ8 125 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 TMEM106BQ9NUM4 274 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 BET1LQ9NYM9 111 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 TRAV30A0A087WSZ9 112 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 FIGNL2A6NMB9 653 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 CTXN2P0C2S0 81 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 NBEAP1P0C6P0 100 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 CT45A8P0DMV1 189 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 CT45A9P0DMV2 189 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 SUPT4H1P63272 117 aaKnown RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 RUNX2Q13950 521 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 CT45A2Q5DJT8 189 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 ZNF684Q5T5D7 378 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 GPR157Q5UAW9 335 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 SPSB3Q6PJ21 355 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 Q6ZVH6 145 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 WDR5BQ86VZ2 330 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 OR2AJ1Q8NGZ0 328 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 RNF166Q96A37 237 aaPredicted RBP6.97□□□□□ -1.29
VPS11-209ENST00000622309 DCBLD2Q96PD2 775 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 ABHD14AQ9BUJ0 271 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 VN1R3Q9BXE9 311 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 SLC2A9Q9NRM0 540 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 FLRT3Q9NZU0 649 aa6.97□□□□□ -1.29
VPS11-209ENST00000622309 CLEC18AA5D8T8 446 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 SERPINE3A8MV23 424 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 SHISA8B8ZZ34 492 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 H7BYZ3 331 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 CD33P20138 364 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 DRD1P21728 446 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 GALR1P47211 349 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 RAB28P51157 221 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 RIPPLY3P57055 190 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 ADIRFQ15847 76 aa6.96□□□□□ -1.29
VPS11-209ENST00000622309 TXNDC8Q6A555 127 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms