RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 SLC25A28Q96A46 364 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 PDCD1LG2Q9BQ51 273 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 FAM234AQ9H0X4 552 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 NOX4Q9NPH5 578 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 OR14J1Q9UGF5 321 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 DHDHQ9UQ10 334 aa13.33□□□□□ -0.28
TRIM28-206ENST00000595974 SOX21Q9Y651 276 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-206ENST00000595974 MDFIC2A0A1B0GVS7 189 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 TMEM89A2RUT3 159 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 RNASE1P07998 156 aaKnown RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 PIPP12273 146 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 COMPP49747 757 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 BLMHQ13867 455 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 CDK5R1Q15078 307 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 FIP1L1Q6UN15 594 aaKnown RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 FAM185AQ8N0U4 392 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 PARP16Q8N5Y8 322 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 Q8N7P7 452 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 RPS4Y2Q8TD47 263 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 TSEN15Q8WW01 171 aaKnown RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 GCDHQ92947 438 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 EMG1Q92979 244 aaKnown RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 ZDHHC16Q969W1 377 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 TMEM80Q96HE8 168 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 DUX5Q96PT3 197 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 ZCCHC4Q9H5U6 513 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 METTL8Q9H825 291 aaKnown RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 UNKLQ9H9P5 680 aaKnown RBP13.32□□□□□ -0.28
TRIM28-206ENST00000595974 SIRT7Q9NRC8 400 aa13.32□□□□□ -0.28
TRIM28-206ENST00000595974 A0A1W2PPH5 198 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 EFCAB10A6NFE3 127 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 F8VVB4 439 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 F8VWA3 439 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 SULT1B1O43704 296 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 ALX3O95076 343 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 TK1P04183 234 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 CHRM2P08172 466 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 GNAO1P09471 354 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 GTF2A1P52655 376 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-206ENST00000595974 RPL31P62899 125 aaKnown RBP13.31□□□□□ -0.28
TRIM28-206ENST00000595974 SLC34A1Q06495 639 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 SLC9A3R2Q15599 337 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 OR2G6Q5TZ20 316 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 NCR3LG1Q68D85 454 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 RPL22L1Q6P5R6 122 aaKnown RBP13.31□□□□□ -0.28
TRIM28-206ENST00000595974 C12orf54Q6X4T0 127 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 SERPINA12Q8IW75 414 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 ASCC1Q8N9N2 400 aaKnown RBP13.31□□□□□ -0.28
TRIM28-206ENST00000595974 OR5D14Q8NGL3 314 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 OR52N1Q8NH53 320 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 TBC1D15Q8TC07 691 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 FBLIM1Q8WUP2 373 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 SEBOXQ9HB31 216 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-206ENST00000595974 C19orf12Q9NSK7 152 aa13.31□□□□□ -0.28
TRIM28-206ENST00000595974 CHCHD3Q9NX63 227 aaKnown RBP13.31□□□□□ -0.28
TRIM28-206ENST00000595974 CNOT2Q9NZN8 540 aaKnown RBP13.31□□□□□ -0.28
TRIM28-206ENST00000595974 K7N7A8 449 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 COL10A1Q03692 680 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 PDZK1IP1Q13113 114 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 XAF1Q6GPH4 301 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 FAM58AQ8N1B3 248 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 OR5D13Q8NGL4 314 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 GPR148Q8TDV2 347 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 SMIM19Q96E16 107 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 RHOFQ9HBH0 211 aa13.3□□□□□ -0.28
TRIM28-206ENST00000595974 RBFOX1Q9NWB1 397 aaKnown RBP13.3□□□□□ -0.28
TRIM28-206ENST00000595974 NKX1-2Q9UD57 310 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-206ENST00000595974 RNASEK-C17orf49H0YIS7 233 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 HOXA3O43365 443 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-206ENST00000595974 SPRY1O43609 319 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-206ENST00000595974 ZNF737O75373 536 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 INMTO95050 263 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 CD2P06729 351 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 HCKP08631 526 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 BCL3P20749 454 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 EEF1B2P24534 225 aaKnown RBP13.29□□□□□ -0.28
TRIM28-206ENST00000595974 ST3GAL4Q11206 333 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 SPIN3Q5JUX0 258 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 Q6YL49 198 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 PDZD9Q8IXQ8 264 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 SAXO1Q8IYX7 474 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 TMEM86BQ8N661 226 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 RGP1Q92546 391 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-206ENST00000595974 TFAP2CQ92754 450 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 GGHQ92820 318 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 TNFRSF14Q92956 283 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 RFT1Q96AA3 541 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 CPNE2Q96FN4 548 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-206ENST00000595974 SPACA5Q96QH8 159 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 PLCXD1Q9NUJ7 323 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 BABAM2Q9NXR7 383 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 POMT1Q9Y6A1 747 aa13.29□□□□□ -0.28
TRIM28-206ENST00000595974 TENM1Q9UKZ4 2725 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 A0A0U1RQK1 487 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 H0YJX3 145 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 OGG1O15527 345 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 KDM4BO94953 1096 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 HAND1O96004 215 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 MELTFP08582 738 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 HKR1P10072 659 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms