RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 OR5D13Q8NGL4 314 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 OR10AC1Q8NH08 325 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 CYGBQ8WWM9 190 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 TNFRSF14Q92956 283 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 OPALINQ96PE5 141 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 ELL3Q9HB65 397 aaPredicted RBP12.18□□□□□ -0.46
SS18-212ENST00000579061 SIRT7Q9NRC8 400 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 OR14J1Q9UGF5 321 aa12.18□□□□□ -0.46
SS18-212ENST00000579061 CAB39Q9Y376 341 aaPredicted RBP12.18□□□□□ -0.46
SS18-212ENST00000579061 FBN3Q75N90 2809 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 TRBV2A0A0J9YWF9 115 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 H0YAE9 185 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 RNASEK-C17orf49H0YIS7 233 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 K7N7A8 449 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 HAX1O00165 279 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 ZFPL1O95159 310 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 TK1P04183 234 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 MELTFP08582 738 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 CFPP27918 469 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 CEBPDP49716 269 aaPredicted RBP12.17□□□□□ -0.46
SS18-212ENST00000579061 UBE2E1P51965 193 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 RPL31P62899 125 aaKnown RBP12.17□□□□□ -0.46
SS18-212ENST00000579061 CCDC58Q4VC31 144 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 OGFRL1Q5TC84 451 aaPredicted RBP12.17□□□□□ -0.46
SS18-212ENST00000579061 FIP1L1Q6UN15 594 aaKnown RBP12.17□□□□□ -0.46
SS18-212ENST00000579061 LDLRAD3Q86YD5 345 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 FAM185AQ8N0U4 392 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 PIP4P2Q8N4L2 257 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 PARP16Q8N5Y8 322 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 OR5AK2Q8NH90 309 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 CNIH3Q8TBE1 160 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 SSMEM1Q8WWF3 244 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 SLAMF9Q96A28 289 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 ZCCHC4Q9H5U6 513 aa12.17□□□□□ -0.46
SS18-212ENST00000579061 DIMT1Q9UNQ2 313 aaKnown RBP12.17□□□□□ -0.46
SS18-212ENST00000579061 A0A0U1RQK1 487 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 E9PI62 339 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 F8VVB4 439 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 F8VWA3 439 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 ZNF737O75373 536 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 CLIC3O95833 236 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 OCM2P0CE71 109 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 OCMP0CE72 109 aaPredicted RBP12.16□□□□□ -0.46
SS18-212ENST00000579061 RPL15P61313 204 aaKnown RBP12.16□□□□□ -0.46
SS18-212ENST00000579061 COL10A1Q03692 680 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 ACSM1Q08AH1 577 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 PDZK1IP1Q13113 114 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 RPL22L1Q6P5R6 122 aaKnown RBP12.16□□□□□ -0.46
SS18-212ENST00000579061 TMPRSS11AQ6ZMR5 421 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 SERPINA12Q8IW75 414 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 BATF2Q8N1L9 274 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 C3orf56Q8N813 242 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 OR5D14Q8NGL3 314 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 RPS4Y2Q8TD47 263 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 EMG1Q92979 244 aaKnown RBP12.16□□□□□ -0.46
SS18-212ENST00000579061 SNX22Q96L94 193 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 PDCD1LG2Q9BQ51 273 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 DCLRE1BQ9H816 532 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 RHOFQ9HBH0 211 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 C19orf12Q9NSK7 152 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 EXOSC1Q9Y3B2 195 aaKnown RBP12.16□□□□□ -0.46
SS18-212ENST00000579061 FAM96BQ9Y3D0 163 aa12.16□□□□□ -0.46
SS18-212ENST00000579061 hCG_1809904A0A1W2PP81 198 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 A0A1W2PPE2 198 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 A0A1W2PR64 198 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 A0A1W2PRV1 198 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 NPFFO15130 113 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 FBP1P09467 338 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 POU3F4P49335 361 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 ETV1P50549 477 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 MED21Q13503 144 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 ZNF146Q15072 292 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 SPIN3Q5JUX0 258 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 TMEM200BQ69YZ2 307 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 PDZD9Q8IXQ8 264 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 SAXO1Q8IYX7 474 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 FAM58AQ8N1B3 248 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 ASCC1Q8N9N2 400 aaKnown RBP12.15□□□□□ -0.46
SS18-212ENST00000579061 OR13C9Q8NGT0 318 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 DHDHQ9UQ10 334 aa12.15□□□□□ -0.46
SS18-212ENST00000579061 SF3B6Q9Y3B4 125 aaKnown RBP12.15□□□□□ -0.46
SS18-212ENST00000579061 SPRY1O43609 319 aaPredicted RBP12.14□□□□□ -0.47
SS18-212ENST00000579061 SULT1B1O43704 296 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 HAND1O96004 215 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 PIPP12273 146 aaPredicted RBP12.14□□□□□ -0.47
SS18-212ENST00000579061 MYL12AP19105 171 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 BCL3P20749 454 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 CAPGP40121 348 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 IER3P46695 156 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 NPBWR2P48146 333 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 KLRD1Q13241 179 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 CDK5R1Q15078 307 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 C8orf59Q8N0T1 100 aaPredicted RBP12.14□□□□□ -0.47
SS18-212ENST00000579061 OR8H2Q8N162 312 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 C11orf42Q8N5U0 333 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 ZSCAN4Q8NAM6 433 aaPredicted RBP12.14□□□□□ -0.47
SS18-212ENST00000579061 OR52N1Q8NH53 320 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 TSEN15Q8WW01 171 aaKnown RBP12.14□□□□□ -0.47
SS18-212ENST00000579061 TMEM80Q96HE8 168 aa12.14□□□□□ -0.47
SS18-212ENST00000579061 CHIAQ9BZP6 476 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms