RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CD177Q8N6Q3 437 aa16.1■□□□□ 0.17
SS18-209ENST00000578595 LHX4Q969G2 390 aa16.1■□□□□ 0.17
SS18-209ENST00000578595 SMIM19Q96E16 107 aa16.1■□□□□ 0.17
SS18-209ENST00000578595 C19orf24Q9BVV8 132 aa16.1■□□□□ 0.17
SS18-209ENST00000578595 SCN3BQ9NY72 215 aa16.1■□□□□ 0.17
SS18-209ENST00000578595 MAB21L2Q9Y586 359 aa16.1■□□□□ 0.17
SS18-209ENST00000578595 PTGES3LE9PB15 166 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 H0YJX3 145 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 ANGPTL7O43827 346 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 LALBAP00709 142 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 KNG1P01042 644 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 CALCBP10092 127 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 PRKACAP17612 351 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 BCL3P20749 454 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 CAV3P56539 151 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 HILS1P60008 231 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 RUSC1-AS1Q66K80 236 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 LAIR2Q6ISS4 152 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 VMO1Q7Z5L0 202 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 Q8IYB0 196 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 SDSLQ96GA7 329 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 TBX15Q96SF7 602 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 GPER1Q99527 375 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 HES4Q9HCC6 221 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 SIRT7Q9NRC8 400 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 PLCXD1Q9NUJ7 323 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 TAS2R4Q9NYW5 299 aa16.09■□□□□ 0.17
SS18-209ENST00000578595 FBN1P35555 2871 aaKnown RBP16.09■□□□□ 0.17
SS18-209ENST00000578595 F8VVB4 439 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 F8VWA3 439 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 TRIM77I1YAP6 450 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 RAB3AP20336 220 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 C21orf33P30042 268 aaPredicted RBP16.08■□□□□ 0.16
SS18-209ENST00000578595 TAS2R43P59537 309 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 ERVK11-1P61568 191 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 COL10A1Q03692 680 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 BLMHQ13867 455 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 PDCD1Q15116 288 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 SATL1Q86VE3 508 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 OR13C5Q8NGS8 318 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 FBLIM1Q8WUP2 373 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 RGP1Q92546 391 aaPredicted RBP16.08■□□□□ 0.16
SS18-209ENST00000578595 TMEM106AQ96A25 262 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 DUX5Q96PT3 197 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 FAM192AQ9GZU8 254 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 SIRPDQ9H106 197 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 RBFOX1Q9NWB1 397 aaKnown RBP16.08■□□□□ 0.16
SS18-209ENST00000578595 ERGIC3Q9Y282 383 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 ZNF281Q9Y2X9 895 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 KPTNQ9Y664 436 aa16.08■□□□□ 0.16
SS18-209ENST00000578595 SIRT4Q9Y6E7 314 aaPredicted RBP16.08■□□□□ 0.16
SS18-209ENST00000578595 KIAA2026Q5HYC2 2103 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 ATP6V1G2O95670 118 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 TMEM225BP0DP42 221 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 MMP9P14780 707 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 NPBWR2P48146 333 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 WNT4P56705 351 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 PPP3R1P63098 170 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 ACTG1P63261 375 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 PRB3Q04118 309 aaPredicted RBP16.07■□□□□ 0.16
SS18-209ENST00000578595 PDZK1IP1Q13113 114 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 C6orf141Q5SZD1 244 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 FAM58AQ8N1B3 248 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 PARP16Q8N5Y8 322 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 OR4M1Q8NGD0 313 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 MYDGFQ969H8 173 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 ZDHHC16Q969W1 377 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 CPNE2Q96FN4 548 aaPredicted RBP16.07■□□□□ 0.16
SS18-209ENST00000578595 IL36RNQ9UBH0 155 aa16.07■□□□□ 0.16
SS18-209ENST00000578595 SOX21Q9Y651 276 aaPredicted RBP16.07■□□□□ 0.16
SS18-209ENST00000578595 TRBV23-1A0A0A0MS06 115 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 MDFIC2A0A1B0GVS7 189 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 HAND1O96004 215 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 CHRM2P08172 466 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 GABRR1P24046 479 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 DUSP1P28562 367 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 HSPA13P48723 471 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 EDDM3BP56851 147 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 RPL31P62899 125 aaKnown RBP16.06■□□□□ 0.16
SS18-209ENST00000578595 BAMBIQ13145 260 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 USP43Q70EL4 1123 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.06■□□□□ 0.16
SS18-209ENST00000578595 LY6G5BQ8NDX9 201 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 GHSRQ92847 366 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 CNBD2Q96M20 576 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 C19orf12Q9NSK7 152 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 GLS2Q9UI32 602 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 GSTK1Q9Y2Q3 226 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 PCDHGB5Q9Y5G0 923 aa16.06■□□□□ 0.16
SS18-209ENST00000578595 STAB1Q9NY15 2570 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 OGG1O15527 345 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 MT-ND2P03891 347 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 TK1P04183 234 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 CDK1P06493 297 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 EDDM3AQ14507 147 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 KISS1Q15726 138 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 GDPD3Q7L5L3 318 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 RNF144BQ7Z419 303 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 KIR3DL3Q8N743 410 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 OR51A2Q8NGJ7 313 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms