RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CEP19Q96LK0 163 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 ZNF488Q96MN9 340 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 ZNF48Q96MX3 618 aaPredicted RBP6.68□□□□□ -1.34
VPS53-214ENST00000572607 NRIP2Q9BQI9 281 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 SIRPDQ9H106 197 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 AMBNQ9NP70 447 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 NOX4Q9NPH5 578 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 ESM1Q9NQ30 184 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 CHCHD3Q9NX63 227 aaKnown RBP6.68□□□□□ -1.34
VPS53-214ENST00000572607 AASSQ9UDR5 926 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 FAM96BQ9Y3D0 163 aa6.68□□□□□ -1.34
VPS53-214ENST00000572607 MGAM2Q2M2H8 2515 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 IGKV1D-17A0A075B6S4 117 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 IGHV1-69DA0A0B4J2H0 117 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 CENPVL3A0A0U1RRI6 287 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 hCG_1809904A0A1W2PP81 198 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 A0A1W2PPE2 198 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 A0A1W2PR64 198 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 A0A1W2PRV1 198 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 TMEM212A6NML5 194 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 M0R1W7 72 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 HOXA3O43365 443 aaPredicted RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 KNG1P01042 644 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 IGHV1-69P01742 117 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 TFF1P04155 84 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 RNASE1P07998 156 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 ATF1P18846 271 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 MYL12AP19105 171 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 AMY2BP19961 511 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 AZGP1P25311 298 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 POU3F4P49335 361 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 NANOS3P60323 173 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 FOXL1Q12952 345 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 ALKBH1Q13686 389 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 SLC9A3R2Q15599 337 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 DEFB112Q30KQ8 113 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 ZNF691Q5VV52 312 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 NCR3LG1Q68D85 454 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 TMPRSS11AQ6ZMR5 421 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 LHFPL2Q6ZUX7 228 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 SLC25A26Q70HW3 274 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 UTS2BQ765I0 119 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 ANGPTL5Q86XS5 388 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 CALHM1Q8IU99 346 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 PDZD9Q8IXQ8 264 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 MKXQ8IYA7 352 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 Q8IYB0 196 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 BATF2Q8N1L9 274 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 FGFRL1Q8N441 504 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 C3orf56Q8N813 242 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 ASCC1Q8N9N2 400 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 ZNRF1Q8ND25 227 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 OR52I1Q8NGK6 324 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 C8orf46Q8TAG6 207 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 TSEN15Q8WW01 171 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 EMG1Q92979 244 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 SLAMF9Q96A28 289 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 FGGYQ96C11 551 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 PELI1Q96FA3 418 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 CPNE2Q96FN4 548 aaPredicted RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 OPALINQ96PE5 141 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 DUX5Q96PT3 197 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 FAM234AQ9H0X4 552 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 METTL8Q9H825 291 aaKnown RBP6.67□□□□□ -1.34
VPS53-214ENST00000572607 SIRT7Q9NRC8 400 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 ERVK13-1Q9NX77 482 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 GLS2Q9UI32 602 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 ZNF222Q9UK12 451 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 DHDHQ9UQ10 334 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 MYRFQ9Y2G1 1151 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 MAB21L2Q9Y586 359 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 PCDHGB5Q9Y5G0 923 aa6.67□□□□□ -1.34
VPS53-214ENST00000572607 TRBV2A0A0J9YWF9 115 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 MDFIC2A0A1B0GVS7 189 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 BTBD17A6NE02 478 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 OR4C45A6NMZ5 311 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 MAGEB3O15480 346 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 FCN3O75636 299 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 INMTO95050 263 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 PAHP00439 452 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 CRYBA1P05813 215 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 CHRM2P08172 466 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 FBP1P09467 338 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 HKR1P10072 659 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 DCKP27707 260 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 PEX2P28328 305 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 CEBPDP49716 269 aaPredicted RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 COMPP49747 757 aaPredicted RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 RPL31P62899 125 aaKnown RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 IL18R1Q13478 541 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 METAP1DQ6UB28 335 aaPredicted RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 Q6YL49 198 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 C1orf122Q6ZSJ8 110 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 GDPD3Q7L5L3 318 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 DHRSXQ8N5I4 330 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 TMEM86BQ8N661 226 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 ZSCAN4Q8NAM6 433 aaPredicted RBP6.66□□□□□ -1.34
VPS53-214ENST00000572607 OR5D13Q8NGL4 314 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 OR13C9Q8NGT0 318 aa6.66□□□□□ -1.34
VPS53-214ENST00000572607 OR5AK2Q8NH90 309 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms