RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 RFX4Q33E94 735 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 FAM78AQ5JUQ0 283 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 FNBP1LQ5T0N5 605 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 FAM219BQ5XKK7 198 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 C3orf33Q6P1S2 294 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ZNF793Q6ZN11 406 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CREB3L2Q70SY1 520 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TMEM144Q7Z5S9 345 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 GALNT10Q86SR1 603 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CARM1Q86X55 608 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TRAPPC5Q8IUR0 188 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 PDIK1LQ8N165 341 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ATPAF2Q8N5M1 289 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ARIH2OSQ8N7S6 290 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ZNF557Q8N988 423 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 GATD1Q8NB37 220 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 OR51D1Q8NGF3 324 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 OR4C13Q8NGP0 309 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 C16orf52Q8NHV5 167 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 LNX1Q8TBB1 728 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 MRGPRDQ8TDS7 321 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 PYROXD1Q8WU10 500 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 PYDC1Q8WXC3 89 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 MRPS31Q92665 395 aaKnown RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 POM121L2Q96KW2 1035 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 KCTD7Q96MP8 289 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ALKBH3Q96Q83 286 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 MUC4Q99102 2169 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 DOK1Q99704 481 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 COPS4Q9BT78 406 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 C6orf62Q9GZU0 229 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 ARL6Q9H0F7 186 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 PCBD2Q9H0N5 130 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 TRABDQ9H4I3 376 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 RNF41Q9H4P4 317 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 REEP1Q9H902 201 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 C3orf14Q9HBI5 128 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 PLGRKTQ9HBL7 147 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 KRCC1Q9NPI7 259 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 B3GAT2Q9NPZ5 323 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.38□□□□□ -2.03
VPS35-209ENST00000568642 DEPPQ9NTK1 212 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CMTM6Q9NX76 183 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 PAK5Q9P286 719 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 STOML2Q9UJZ1 356 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 ING4Q9UNL4 249 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 UBIAD1Q9Y5Z9 338 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 V9GYQ6 96 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 USF3Q68DE3 2245 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 STAB2Q8WWQ8 2551 aa2.38□□□□□ -2.03
VPS35-209ENST00000568642 CADP27708 2225 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IGLV1-36A0A0B4J1U3 117 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IGKV1D-13A0A0B4J2D9 117 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IGHV4-61A0A0C4DH41 118 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 A0A0G2JRQ6 117 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 DNAJC9-AS1A6NH13 148 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 DHRS7CA6NNS2 312 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 SEC14L6B5MCN3 397 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 DISC1C4P0D8 188 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 M0R1B8 84 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 SULT2B1O00204 365 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 DFFAO00273 331 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 CDC7O00311 574 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 GABRPO00591 440 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 ADAM10O14672 748 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 KMOO15229 486 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 CCL16O15467 120 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 ARPC5O15511 151 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 SLC16A7O60669 478 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 EIF3GO75821 320 aaKnown RBP eCLIP2.37□□□□□ -2.03
VPS35-209ENST00000568642 NXPH4O95158 308 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 PEX11BO96011 259 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 GCGP01275 180 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IGHV4-59P01825 116 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 PPBPP02775 128 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 CALB1P05937 261 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IGKV5-2P06315 115 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 OR9G9P0C7N8 305 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IGHV4-38-2P0DP08 117 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IGKV1-13P0DP09 117 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 GFAPP14136 432 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 UGT2B7P16662 529 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 PSMA1P25786 263 aaKnown RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 CRABP2P29373 138 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 CRABP1P29762 137 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 OMPP47874 163 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 RND2P52198 227 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 BIDP55957 195 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IL5RAQ01344 420 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 DPTQ07507 201 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 ZNF763Q0D2J5 394 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 IHHQ14623 411 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 PON3Q15166 354 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 PTGES3Q15185 160 aaKnown RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 ATP6AP1Q15904 470 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 POU2AF1Q16633 256 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 KRTAP24-1Q3LI83 254 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 AKIRIN2Q53H80 203 aa2.37□□□□□ -2.03
VPS35-209ENST00000568642 KLF17Q5JT82 389 aaPredicted RBP2.37□□□□□ -2.03
VPS35-209ENST00000568642 C8orf82Q6P1X6 216 aaPredicted RBP2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms