RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TSSK6Q9BXA6 273 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 MED20Q9H944 212 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 HES4Q9HCC6 221 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 TAS2R1Q9NYW7 299 aa12.71□□□□□ -0.37
CLK3-223ENST00000568488 RBMY1BA6NDE4 496 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 RBMY1EA6NEQ0 496 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 TOR1AO14656 332 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 RBMY1DP0C7P1 496 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 CEACAM3P40198 252 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 PSMA6P60900 246 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 RBM39Q14498 530 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 TPTE2P1Q5T6R2 138 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 PRAMEF5Q5TYX0 476 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 KRT74Q7RTS7 529 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 RTN4RL2Q86UN3 420 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 FOXRED2Q8IWF2 684 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 STPG2Q8N412 459 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 RNFT2Q96EX2 444 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 SNX22Q96L94 193 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 CHST6Q9GZX3 395 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 EDA2RQ9HAV5 297 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 SAR1AQ9NR31 198 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 GPR173Q9NS66 373 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 DCAF13Q9NV06 445 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 MRGBPQ9NV56 204 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 INTS9Q9NV88 658 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 IL20Q9NYY1 176 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 ENPP5Q9UJA9 477 aa12.7□□□□□ -0.38
CLK3-223ENST00000568488 SAMD4AQ9UPU9 718 aaKnown RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 SIRT4Q9Y6E7 314 aaPredicted RBP12.7□□□□□ -0.38
CLK3-223ENST00000568488 TMEM82A0PJX8 343 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 INMTO95050 263 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 IFNGP01579 166 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 GABRR1P24046 479 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 PEX2P28328 305 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 HES1Q14469 280 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 HNF4GQ14541 408 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 GRK1Q15835 563 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 CXorf66Q5JRM2 361 aaPredicted RBP12.69□□□□□ -0.38
CLK3-223ENST00000568488 SAMD4BQ5PRF9 694 aaKnown RBP12.69□□□□□ -0.38
CLK3-223ENST00000568488 GLYATQ6IB77 296 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 OR52W1Q6IF63 320 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 ANGPTL5Q86XS5 388 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 DRAM1Q8N682 238 aa12.69□□□□□ -0.38
CLK3-223ENST00000568488 ALMS1Q8TCU4 4167 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 DSCAML1Q8TD84 2053 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 FAM183AA6NL82 134 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 BUB1B-PAK6H3BSN5 160 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 EDF1O60869 148 aaKnown RBP12.68□□□□□ -0.38
CLK3-223ENST00000568488 IGLV1-47P01700 117 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 HCKP08631 526 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 ATP6V1B1P15313 513 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 RRM2P31350 389 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 INSL3P51460 131 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 PNLIPRP3Q17RR3 467 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 CCDC144NLQ6NUI1 221 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 C5orf56Q8N8D9 126 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 OR52N4Q8NGI2 321 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 OR51E1Q8TCB6 317 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 CREB3L1Q96BA8 519 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 HOPXQ9BPY8 73 aaPredicted RBP12.68□□□□□ -0.38
CLK3-223ENST00000568488 OR51V1Q9H2C8 321 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 GPR84Q9NQS5 396 aa12.68□□□□□ -0.38
CLK3-223ENST00000568488 A0A0U1RQV5 110 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 LINC01548A6NM66 108 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 RIIAD1A6NNX1 92 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 GMNNO75496 209 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 ZNF3P17036 446 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 TMEM11P17152 192 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 CDK2P24941 298 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 CDX1P47902 265 aaPredicted RBP12.67□□□□□ -0.38
CLK3-223ENST00000568488 ERVK11-1P61568 191 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 ESRRGP62508 458 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 C16orf89Q6UX73 402 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 TRPM8Q7Z2W7 1104 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 OR9Q2Q8NGE9 314 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 OTOSQ8NHW6 89 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 ZNF286AQ9HBT8 521 aa12.67□□□□□ -0.38
CLK3-223ENST00000568488 SORL1Q92673 2214 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 PCLOQ9Y6V0 5065 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 TMEM269A0A1B0GVZ9 245 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 PQLC2LA1A4F0 135 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 F8VVB4 439 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 F8VWA3 439 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 SELENOFO60613 162 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 IGHG2P01859 326 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 IGHA1P01876 353 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 VEGFCP49767 419 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 PRRX1P54821 245 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 GPR50Q13585 617 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 HLA-DRB5Q30154 266 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 CLVS2Q5SYC1 327 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 LCN1P1Q5VSP4 162 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 SLX4IPQ5VYV7 408 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 RASSF6Q6ZTQ3 369 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 THNSL2Q86YJ6 484 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 ZNF454Q8N9F8 522 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 OR2T33Q8NG76 320 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 OR11H1Q8NG94 326 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 OR56B4Q8NH76 319 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms