RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 DYNC2LI1Q8TCX1 351 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 FAM168AQ92567 244 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 KCTD12Q96CX2 325 aaKnown RBP17.32■□□□□ 0.36
CLN3-212ENST00000564574 PIMREGQ9BSJ6 248 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 LIN7BQ9HAP6 207 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 HMG20AQ9NP66 347 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 RBFOX1Q9NWB1 397 aaKnown RBP17.32■□□□□ 0.36
CLN3-212ENST00000564574 CCDC59Q9P031 241 aaKnown RBP17.32■□□□□ 0.36
CLN3-212ENST00000564574 ABRACLQ9P1F3 81 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 FBLN5Q9UBX5 448 aa17.32■□□□□ 0.36
CLN3-212ENST00000564574 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.31■□□□□ 0.36
CLN3-212ENST00000564574 WNT9BO14905 357 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 PPIHO43447 177 aaKnown RBP17.31■□□□□ 0.36
CLN3-212ENST00000564574 ZNF182P17025 639 aaPredicted RBP17.31■□□□□ 0.36
CLN3-212ENST00000564574 SERPINA2P20848 420 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 CLDN12P56749 244 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 FGF12P61328 243 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 DYNC1I2Q13409 638 aaKnown RBP17.31■□□□□ 0.36
CLN3-212ENST00000564574 KCNJ8Q15842 424 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 MICBQ29980 383 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 SLC22A6Q4U2R8 563 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 FOXB2Q5VYV0 432 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 DNM1P46Q6ZS02 220 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 MUC20Q8N307 709 aaPredicted RBP17.31■□□□□ 0.36
CLN3-212ENST00000564574 OR51D1Q8NGF3 324 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 AP3S1Q92572 193 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 FOXC2Q99958 501 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 NLKQ9UBE8 527 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 DNAJB11Q9UBS4 358 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 WIPI2Q9Y4P8 454 aa17.31■□□□□ 0.36
CLN3-212ENST00000564574 CREBBPQ92793 2442 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 TMEM14DPA8MWL7 114 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 F8VVB4 439 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 F8VWA3 439 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 KNG1P01042 644 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 IGHV2-70P01814 119 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 VSIG8P0DPA2 414 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 GTF2F2P13984 249 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 PRKACAP17612 351 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 MDH2P40926 338 aaKnown RBP17.3■□□□□ 0.36
CLN3-212ENST00000564574 C2orf76Q3KRA6 126 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 NHLRC3Q5JS37 347 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 SPIN3Q5JUX0 258 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 SHEQ5VZ18 495 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 BATF2Q8N1L9 274 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 OSR2Q8N2R0 312 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 OR51T1Q8NGJ9 327 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 OR10K1Q8NGX5 313 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 C10orf105Q8TEF2 133 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 PTX4Q96A99 478 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 POM121Q96HA1 1249 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 BARHL1Q9BZE3 327 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 WDR13Q9H1Z4 485 aa17.3■□□□□ 0.36
CLN3-212ENST00000564574 SEBOXQ9HB31 216 aaPredicted RBP17.3■□□□□ 0.36
CLN3-212ENST00000564574 NDUFA2O43678 99 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 CRTAPO75718 401 aaPredicted RBP17.29■□□□□ 0.36
CLN3-212ENST00000564574 GMFBP60983 142 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 QRFPP83859 136 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 IL13RA2Q14627 380 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 ZMYND11Q15326 602 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 CLEC12BQ2HXU8 276 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 TMEM155Q4W5P6 130 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 FAM201AQ5SY85 155 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 LINC00596Q86U02 117 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 LRRC28Q86X40 367 aaPredicted RBP17.29■□□□□ 0.36
CLN3-212ENST00000564574 ACOT12Q8WYK0 555 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 DNTTIP1Q9H147 329 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 TMEM165Q9HC07 324 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 GLS2Q9UI32 602 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 ETV7Q9Y603 341 aa17.29■□□□□ 0.36
CLN3-212ENST00000564574 VWC2LB2RUY7 222 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 C3orf80F5H4A9 247 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 LDLRAD4O15165 306 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 MGMTP16455 207 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 RAB6AP20340 208 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 RBMXP38159 391 aaKnown RBP17.28■□□□□ 0.36
CLN3-212ENST00000564574 ZNF146Q15072 292 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 FAM189A2Q15884 450 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 ZNF404Q494X3 552 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 Q5PR19 223 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 SFRP4Q6FHJ7 346 aaPredicted RBP17.28■□□□□ 0.36
CLN3-212ENST00000564574 TMEM59Q9BXS4 323 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 OR5V1Q9UGF6 321 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 RAB22AQ9UL26 194 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 SPATA2Q9UM82 520 aa17.28■□□□□ 0.36
CLN3-212ENST00000564574 TMEM272A0A1B0GTI8 110 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 A0A1W2PP11 408 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 OR2AT4A6NND4 320 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 MPIG6BO95866 241 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 PSG2P11465 335 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 SNRPBP14678 240 aaKnown RBP17.27■□□□□ 0.36
CLN3-212ENST00000564574 SLC25A16P16260 332 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 RBM11P57052 281 aaKnown RBP17.27■□□□□ 0.36
CLN3-212ENST00000564574 HOXA4Q00056 320 aaPredicted RBP17.27■□□□□ 0.36
CLN3-212ENST00000564574 UNC119Q13432 240 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 AVPI1Q5T686 147 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 STUMQ69YW2 141 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 MZT2AQ6P582 158 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 SPICQ8N5J4 248 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 TMEM104Q8NE00 496 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms