RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 OR11H6Q8NGC7 330 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 PHF21AQ96BD5 680 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 MOB1AQ9H8S9 216 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 PAPOLBQ9NRJ5 636 aaKnown RBP13.57□□□□□ -0.24
CLN3-211ENST00000564091 MTCH1Q9NZJ7 389 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 DNAJB9Q9UBS3 223 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 PITPNC1Q9UKF7 332 aa13.57□□□□□ -0.24
CLN3-211ENST00000564091 NBEAL2Q6ZNJ1 2754 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 TMEM82A0PJX8 343 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 FKBP6O75344 327 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 OR12D2P58182 307 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 IL24Q13007 206 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 EDDM3AQ14507 147 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 GDPD3Q7L5L3 318 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 CADM1Q9BY67 442 aaKnown RBP13.56□□□□□ -0.24
CLN3-211ENST00000564091 PKIBQ9C010 78 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 ADGRL4Q9HBW9 690 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.56□□□□□ -0.24
CLN3-211ENST00000564091 SNX5Q9Y5X3 404 aa13.56□□□□□ -0.24
CLN3-211ENST00000564091 A0A1W2PRX2 142 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 F2RL2O00254 374 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 RPP14O95059 124 aaKnown RBP13.55□□□□□ -0.24
CLN3-211ENST00000564091 VDAC2P45880 294 aaPredicted RBP13.55□□□□□ -0.24
CLN3-211ENST00000564091 DAPP51397 102 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 ACTR3P61158 418 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 ACTA2P62736 377 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 ACTG2P63267 376 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 ACTC1P68032 377 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 ACTA1P68133 377 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 SLC34A1Q06495 639 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 ARSJQ5FYB0 599 aaPredicted RBP13.55□□□□□ -0.24
CLN3-211ENST00000564091 AADACL4Q5VUY2 407 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 FOXB2Q5VYV0 432 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 Q6ZSR3 168 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 TPRX1Q8N7U7 411 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 TCEANCQ8N8B7 351 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 SLAMF9Q96A28 289 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 CEP19Q96LK0 163 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 ZNF714Q96N38 554 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 H2AFY2Q9P0M6 372 aaPredicted RBP13.55□□□□□ -0.24
CLN3-211ENST00000564091 SLC7A11Q9UPY5 501 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 DNAH9Q9NYC9 4486 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 RYR3Q15413 4870 aa13.55□□□□□ -0.24
CLN3-211ENST00000564091 PLXNB1O43157 2135 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 IGKV1-27A0A075B6S5 117 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 ZNF670-ZNF695F2Z2N8 137 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 MITFO75030 526 aaPredicted RBP13.54□□□□□ -0.24
CLN3-211ENST00000564091 RBP4P02753 201 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 IGLL1P15814 213 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 CCL1P22362 96 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 DYNLT3P51808 116 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 UBE2V2Q15819 145 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 FAHD1Q6P587 224 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 SSX6Q7RTT6 188 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 OR8H2Q8N162 312 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 CCDC197Q8NCU1 140 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 TBX5Q99593 518 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 OCSTAMPQ9BR26 566 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 CHST6Q9GZX3 395 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 CLN6Q9NWW5 311 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 IL36RNQ9UBH0 155 aa13.54□□□□□ -0.24
CLN3-211ENST00000564091 hADV38S2A0JD32 116 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 DHRS7CA6NNS2 312 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 IGHA1P01876 353 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 HOXB6P17509 224 aaKnown RBP13.53□□□□□ -0.24
CLN3-211ENST00000564091 EPHA2P29317 976 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 EFNB1P98172 346 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 FLOT2Q14254 428 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 SLC25A26Q70HW3 274 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 EGFL6Q8IUX8 553 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 ZNF676Q8N7Q3 588 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 OR5AU1Q8NGC0 362 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 OR52N4Q8NGI2 321 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 NDNFQ8TB73 568 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 DNAJC9Q8WXX5 260 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 SNX22Q96L94 193 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 MNTQ99583 582 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 PLEKHA1Q9HB21 404 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 SESN1Q9Y6P5 492 aa13.53□□□□□ -0.24
CLN3-211ENST00000564091 IGHV2-26A0A0B4J1V2 119 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 TCRBV3S1A0A5B6 114 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 FAM90A22PA8MWA6 464 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 SYT7O43581 403 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 HAND1O96004 215 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 CALCBP10092 127 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 CD33P20138 364 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 GABRR1P24046 479 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 DUSP1P28562 367 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 CD83Q01151 205 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 MEF2CQ06413 473 aaPredicted RBP13.52□□□□□ -0.25
CLN3-211ENST00000564091 GRK1Q15835 563 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 MINOS1Q5TGZ0 78 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 NXNL2Q5VZ03 156 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 YIPF7Q8N8F6 280 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 WFDC9Q8NEX5 89 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 TMEM163Q8TC26 289 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 NRBF2Q96F24 287 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 IL4I1Q96RQ9 567 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 MINOS1-NBL1R4GNA1 71 aa13.52□□□□□ -0.25
CLN3-211ENST00000564091 PSPNO60542 156 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms