RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 FZD2Q14332 565 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 CLINT1Q14677 625 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 UNC50Q53HI1 259 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 C10orf91Q5T1B1 145 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 C1orf194Q5T5A4 169 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 FAM162BQ5T6X4 162 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 ZFAND6Q6FIF0 208 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 FAAP20Q6NZ36 180 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 RPL22L1Q6P5R6 122 aaKnown RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 RNF144BQ7Z419 303 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 OAFQ86UD1 273 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 ZNF547Q8IVP9 402 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 OR8I2Q8N0Y5 310 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 CA13Q8N1Q1 262 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 BPIFB2Q8N4F0 458 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 CLDN19Q8N6F1 224 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 KIR3DL3Q8N743 410 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 POC1AQ8NBT0 407 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 ZNF485Q8NCK3 441 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 OR52L1Q8NGH7 329 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 MCFD2Q8NI22 146 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 VN1R17PQ8TDU5 208 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 ZNF418Q8TF45 676 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 OR8D1Q8WZ84 308 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 NEUROG1Q92886 237 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 WBP2Q969T9 261 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 APOBEC3DQ96AK3 386 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 GALNT14Q96FL9 552 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 TIMD4Q96H15 378 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 OXGR1Q96P68 337 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 CDX2Q99626 313 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 DOHHQ9BU89 302 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 ZBP1Q9H171 429 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 FAM206AQ9NX38 181 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 IL17CQ9P0M4 197 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 MRPL27Q9P0M9 148 aaKnown RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 DOK5Q9P104 306 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 LHX3Q9UBR4 397 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 PRO0628Q9UI54 55 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 KCNS2Q9ULS6 477 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 SNX10Q9Y5X0 201 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 BLMP54132 1417 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 SSH2Q76I76 1423 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 COL5A2P05997 1499 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 MYOM2P54296 1465 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 RPRD2Q5VT52 1461 aaKnown RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 SCN4AP35499 1836 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 SRCAPQ6ZRS2 3230 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 ZFYVE16Q7Z3T8 1539 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 ATP10BO94823 1461 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 HEG1Q9ULI3 1381 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 A0A0A6YYD5 115 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 IGHV2OR16-5A0A0B4J2B6 119 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 A0A1B0GVT2 93 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 EXOC1LA0A1B0GW35 172 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 LRIT2A6NDA9 550 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 SERINC4A6NH21 518 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 FAM159BA6NKW6 160 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 J3QR89 54 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 ZNF432O94892 652 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 EML2O95834 649 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 CTSLP07711 333 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 SELEP16581 610 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 AADACP22760 399 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 IMPA1P29218 277 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 RPL12P30050 165 aaKnown RBP4.33□□□□□ -1.72
VPS35-205ENST00000563984 GRPRP30550 384 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 IL2RGP31785 369 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 PYCR1P32322 319 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 RPL13AP40429 203 aaKnown RBP4.33□□□□□ -1.72
VPS35-205ENST00000563984 AMTP48728 403 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 GNG4P50150 75 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 CTSCP53634 463 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 GAS1P54826 345 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 CLDN6P56747 220 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 TAS2R31P59538 309 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 S100A10P60903 97 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 ARG2P78540 354 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 CRYZQ08257 329 aaKnown RBP4.33□□□□□ -1.72
VPS35-205ENST00000563984 C3AR1Q16581 482 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 UPP1Q16831 310 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 IQCJQ1A5X6 159 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 LRRC75BQ2VPJ9 315 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 ZNF284Q2VY69 593 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 SLC25A52Q3SY17 297 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 SYTL3Q4VX76 610 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 DCST2Q5T1A1 773 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 OTPQ5XKR4 325 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 TBPL2Q6SJ96 375 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 OPN5Q6U736 354 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 GTF2H5Q6ZYL4 71 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 MOB3CQ70IA8 216 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 MON1BQ7L1V2 547 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 ANKRD33Q7Z3H0 272 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 KLHDC8BQ8IXV7 354 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 UBALD2Q8IYN6 164 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 TDHQ8IZJ6 230 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 ZNF444Q8N0Y2 327 aaPredicted RBP4.33□□□□□ -1.72
VPS35-205ENST00000563984 FAM24BQ8N5W8 94 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 SMRP1Q8NCR6 262 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms