RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PTGDSP41222 190 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 GPR12P47775 334 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 MRPS10P82664 201 aaKnown RBP8.01□□□□□ -1.13
VPS39-205ENST00000562258 MEF2DQ14814 521 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 FAM201AQ5SY85 155 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 RBFOX1Q9NWB1 397 aaKnown RBP8.01□□□□□ -1.13
VPS39-205ENST00000562258 A0A1W2PP11 408 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 IFNA4P05014 189 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 ALDOBP05062 364 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 OR5H8P0DN80 308 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 OR3A1P47881 315 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 GSG1LQ6UXU4 331 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 ZNF2Q9BSG1 426 aaPredicted RBP8.01□□□□□ -1.13
VPS39-205ENST00000562258 ETV7Q9Y603 341 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 CENPEQ02224 2701 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 LYNX1G3V0Z9 82 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 GEMIN2O14893 280 aaKnown RBP8.01□□□□□ -1.13
VPS39-205ENST00000562258 LYNX1P0DP58 116 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 JUNBP17275 347 aaPredicted RBP8.01□□□□□ -1.13
VPS39-205ENST00000562258 GLYATL2Q8WU03 294 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 S1PR3Q99500 378 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 PHB2Q99623 299 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 SUCNR1Q9BXA5 334 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 TMPRSS13Q9BYE2 586 aa8.01□□□□□ -1.13
VPS39-205ENST00000562258 DOPEY1Q5JWR5 2465 aa8□□□□□ -1.13
VPS39-205ENST00000562258 PPIAL4EA0A075B759 164 aa8□□□□□ -1.13
VPS39-205ENST00000562258 TMEM8BA6NDV4 472 aa8□□□□□ -1.13
VPS39-205ENST00000562258 PPIAL4DF5H284 164 aa8□□□□□ -1.13
VPS39-205ENST00000562258 TXNDC12O95881 172 aa8□□□□□ -1.13
VPS39-205ENST00000562258 GYPAP02724 150 aa8□□□□□ -1.13
VPS39-205ENST00000562258 EIF4EP06730 217 aaKnown RBP8□□□□□ -1.13
VPS39-205ENST00000562258 PPIAL4FP0DN26 164 aa8□□□□□ -1.13
VPS39-205ENST00000562258 CALCRP30988 508 aa8□□□□□ -1.13
VPS39-205ENST00000562258 KIR2DL2P43627 348 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 RPS16P62249 146 aaKnown RBP8□□□□□ -1.13
VPS39-205ENST00000562258 LSAMPQ13449 338 aa8□□□□□ -1.13
VPS39-205ENST00000562258 FAM122BQ7Z309 247 aa8□□□□□ -1.13
VPS39-205ENST00000562258 NRARPQ7Z6K4 114 aa8□□□□□ -1.13
VPS39-205ENST00000562258 OR10R2Q8NGX6 335 aa8□□□□□ -1.13
VPS39-205ENST00000562258 RNASE6Q93091 150 aaKnown RBP8□□□□□ -1.13
VPS39-205ENST00000562258 GALMQ96C23 342 aa8□□□□□ -1.13
VPS39-205ENST00000562258 GPX7Q96SL4 187 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 ZNF471Q9BX82 626 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 C12orf4Q9NQ89 552 aa8□□□□□ -1.13
VPS39-205ENST00000562258 PPIAL4AQ9Y536 164 aa8□□□□□ -1.13
VPS39-205ENST00000562258 HSPB11Q9Y547 144 aa8□□□□□ -1.13
VPS39-205ENST00000562258 COL4A4P53420 1690 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 TMEM82A0PJX8 343 aa8□□□□□ -1.13
VPS39-205ENST00000562258 ATG12O94817 140 aa8□□□□□ -1.13
VPS39-205ENST00000562258 UQCRFS1P47985 274 aa8□□□□□ -1.13
VPS39-205ENST00000562258 PIGYQ3MUY2 71 aa8□□□□□ -1.13
VPS39-205ENST00000562258 DMKNQ6E0U4 476 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 GGNQ86UU5 652 aa8□□□□□ -1.13
VPS39-205ENST00000562258 CATSPERDQ86XM0 798 aa8□□□□□ -1.13
VPS39-205ENST00000562258 C22orf15Q8WYQ4 148 aa8□□□□□ -1.13
VPS39-205ENST00000562258 MRPS24Q96EL2 167 aaKnown RBP8□□□□□ -1.13
VPS39-205ENST00000562258 FAM210AQ96ND0 272 aa8□□□□□ -1.13
VPS39-205ENST00000562258 RIMS4Q9H426 269 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 AUNIPQ9H7T9 357 aa8□□□□□ -1.13
VPS39-205ENST00000562258 CCDC59Q9P031 241 aaKnown RBP8□□□□□ -1.13
VPS39-205ENST00000562258 A0A0G2JNJ9 132 aa8□□□□□ -1.13
VPS39-205ENST00000562258 ZNF716A6NP11 495 aa8□□□□□ -1.13
VPS39-205ENST00000562258 CYB5R3P00387 301 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 DEFA4P12838 97 aa8□□□□□ -1.13
VPS39-205ENST00000562258 TAGLNQ01995 201 aaKnown RBP8□□□□□ -1.13
VPS39-205ENST00000562258 MAB21L1Q13394 359 aa8□□□□□ -1.13
VPS39-205ENST00000562258 ZFAND1Q8TCF1 268 aa8□□□□□ -1.13
VPS39-205ENST00000562258 SOX7Q9BT81 388 aa8□□□□□ -1.13
VPS39-205ENST00000562258 SLC17A5Q9NRA2 495 aa8□□□□□ -1.13
VPS39-205ENST00000562258 Q9UFV3 132 aa8□□□□□ -1.13
VPS39-205ENST00000562258 F5H0A9 414 aaPredicted RBP8□□□□□ -1.13
VPS39-205ENST00000562258 GOSR2O14653 212 aa8□□□□□ -1.13
VPS39-205ENST00000562258 SYNGR3O43761 229 aa8□□□□□ -1.13
VPS39-205ENST00000562258 YIF1AO95070 293 aa8□□□□□ -1.13
VPS39-205ENST00000562258 WISP1O95388 367 aa8□□□□□ -1.13
VPS39-205ENST00000562258 CD3DP04234 171 aa8□□□□□ -1.13
VPS39-205ENST00000562258 BCL3P20749 454 aa8□□□□□ -1.13
VPS39-205ENST00000562258 GFRA1P56159 465 aa8□□□□□ -1.13
VPS39-205ENST00000562258 TLE4Q04727 773 aa8□□□□□ -1.13
VPS39-205ENST00000562258 ZNF181Q2M3W8 571 aa8□□□□□ -1.13
VPS39-205ENST00000562258 LINC01590Q5TEZ4 76 aa8□□□□□ -1.13
VPS39-205ENST00000562258 RHOUQ7L0Q8 258 aa8□□□□□ -1.13
VPS39-205ENST00000562258 OR2T35Q8NGX2 323 aa8□□□□□ -1.13
VPS39-205ENST00000562258 CHPT1Q8WUD6 406 aa8□□□□□ -1.13
VPS39-205ENST00000562258 CCDC32Q9BV29 185 aa8□□□□□ -1.13
VPS39-205ENST00000562258 NECAP2Q9NVZ3 263 aa8□□□□□ -1.13
VPS39-205ENST00000562258 IGHV3OR16-10A0A075B7F0 116 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 A0A1W2PPE3 182 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 TMEM30CPA0ZSE6 113 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 ERVH48-1M5A8F1 160 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 NPIPB7O75200 414 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 APOA2P02652 100 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 HRH1P35367 487 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 CEBPDP49716 269 aaPredicted RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 AESQ08117 197 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 BTNL3Q6UXE8 466 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 Q8IYB0 196 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 OR8B3Q8NGG8 313 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 DYRK2Q92630 601 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 OR8B2Q96RD0 313 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms