RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PRDM14Q9GZV8 571 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 RAB1BQ9H0U4 201 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 OR2S2Q9NQN1 319 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CLCF1Q9UBD9 225 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 OR5V1Q9UGF6 321 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ELF5Q9UKW6 265 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CHD6Q8TD26 2715 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 HELZ2Q9BYK8 2649 aaKnown RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 FXYD6-FXYD2A0A087WZ82 144 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 TERTO14746 1132 aaKnown RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 PHF1O43189 567 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CLDN14O95500 239 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 IGHG3P01860 377 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 RAF1P04049 648 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 TK1P04183 234 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 OR8U9P0C7N5 309 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 NUP62P37198 522 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CA7P43166 264 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 MMP15P51511 669 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ACTBP60709 375 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ACTG1P63261 375 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 AESQ08117 197 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 UBE2V2Q15819 145 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 SMIM21Q3B7S5 101 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 LINC00303Q3SY05 128 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 METTL11BQ5VVY1 283 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 THOC7Q6I9Y2 204 aaKnown RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 IDO2Q6ZQW0 420 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 NLRC3Q7RTR2 1065 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 NRARPQ7Z6K4 114 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 SIAH3Q8IW03 269 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CENPSQ8N2Z9 138 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 OR8U1Q8NH10 309 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 DYNC2LI1Q8TCX1 351 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 SNX18Q96RF0 628 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 PCGF1Q9BSM1 259 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 FXYD6Q9H0Q3 95 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 FN3KRPQ9HA64 309 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF286AQ9HBT8 521 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CRIM1Q9NZV1 1036 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 IL36RNQ9UBH0 155 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 RAB22AQ9UL26 194 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 TBC1D24Q9ULP9 559 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 A0A1B0GVG6 124 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 SHISA3A0PJX4 238 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF503-AS2A6NEH8 195 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 SLC17A2O00624 439 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 PIN1P1O15428 100 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 LILRA1O75019 489 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CD3DP04234 171 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 GAAP10253 952 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CD40LGP29965 261 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CALCRP30988 508 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FAM3AP98173 230 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF45Q02386 682 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 LSAMPQ13449 338 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 GPR176Q14439 515 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM95Q3KNT9 176 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 UBE2NLQ5JXB2 153 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FAHD2BQ6P2I3 314 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FAM219AQ8IW50 185 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CCDC36Q8IYA8 594 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 DRAXINQ8NBI3 349 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 OR51S1Q8NGJ8 323 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FAHD2AQ96GK7 314 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 GPHA2Q96T91 129 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 SUCNR1Q9BXA5 334 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 MS4A5Q9H3V2 200 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FAM206AQ9NX38 181 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 WASF3Q9UPY6 502 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 NCOA6Q14686 2063 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 IGHV1-18A0A0C4DH31 117 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM272A0A1B0GTI8 110 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 SS18L1O75177 396 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 UGT2B10P36537 528 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 BCAP31P51572 246 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 NKX6-1P78426 367 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 TLE4Q04727 773 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 C10orf128Q5T292 105 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 AADACL3Q5VUY0 350 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 IGFL3Q6UXB1 125 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 C1QL2Q7Z5L3 287 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 MYPOPQ86VE0 399 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 ZNRF1Q8ND25 227 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 LEAP2Q969E1 77 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 SEC22AQ96IW7 307 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 MRPL37Q9BZE1 423 aaKnown RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 GPN1Q9HCN4 374 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FLVCR2Q9UPI3 526 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 MED12LQ86YW9 2145 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 A0A0A6YYH2 397 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 A6NJ64 397 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FAM157AC9JC47 383 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 MPPED1O15442 326 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 OGG1O15527 345 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 NDUFB3O43676 98 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 SYNGR3O43761 229 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 SMPD2O60906 423 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF780AO75290 641 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 FBXO24O75426 580 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms