RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TRBV5-5A0A0J9YX44 114 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 RFPL4AA6NLU0 287 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 RFPL4AL1F8VTS6 287 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 M0R1W7 72 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 RGS10O43665 173 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 TOX4O94842 621 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 KDM4BO94953 1096 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 PLATP00750 562 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 ALDOBP05062 364 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 NDUFB7P17568 137 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 C21orf33P30042 268 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 PRDX2P32119 198 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 CAPZA1P52907 286 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 DGUOKQ16854 277 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 RBM48Q5RL73 367 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 XAF1Q6GPH4 301 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 MS4A15Q8N5U1 240 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 LY6G5BQ8NDX9 201 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 OR5T2Q8NGG2 359 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 H1FXQ92522 213 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 RGP1Q92546 391 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 GHSRQ92847 366 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 SLAMF9Q96A28 289 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 SEH1LQ96EE3 360 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 PGLYRP3Q96LB9 341 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 WDFY2Q96P53 400 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF184Q99676 751 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 OCEL1Q9H607 264 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 CNTD2Q9H8S5 307 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 TMEM138Q9NPI0 162 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 MTCH1Q9NZJ7 389 aa11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 RRP15Q9Y3B9 282 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-207ENST00000554051 TRAV40A0A0B4J280 105 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 hCG_1809904A0A1W2PP81 198 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 A0A1W2PPE2 198 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 A0A1W2PQ09 198 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 A0A1W2PR64 198 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 A0A1W2PRV1 198 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 AMY2BP19961 511 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 SOX2P48431 317 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 HILS1P60008 231 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 GUCA2AQ02747 115 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 GPR50Q13585 617 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 SPHARQ15513 63 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 KISS1Q15726 138 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 NCR3LG1Q68D85 454 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 C1orf122Q6ZSJ8 110 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 FAM58AQ8N1B3 248 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 CHST4Q8NCG5 386 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 PXT1Q8NFP0 134 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNF488Q96MN9 340 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 GPER1Q99527 375 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 MS4A7Q9GZW8 240 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 DUSP21Q9H596 190 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 PAK1IP1Q9NWT1 392 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 MAB21L2Q9Y586 359 aa11.89□□□□□ -0.51
CCDC88C-207ENST00000554051 NIPBLQ6KC79 2804 aaeCLIP11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 A0A1B0GW55 424 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 PTGES3LE9PB15 166 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 MRPS14O60783 128 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 LALBAP00709 142 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4L2P0CJ85 424 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4L3P0CJ86 424 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4L4P0CJ87 422 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4L5P0CJ88 424 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4L6P0CJ89 424 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4L7P0CJ90 424 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 MMP9P14780 707 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 CRHBPP24387 322 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 PSMA1P25786 263 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 MTNR1BP49286 362 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 GABARAPL2P60520 117 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNF146Q15072 292 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4L9Q6RFH8 374 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 METAP1DQ6UB28 335 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 PRSS48Q7RTY5 328 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 OR8H2Q8N162 312 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 NKAIN3Q8N8D7 197 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 ASCC1Q8N9N2 400 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNRF1Q8ND25 227 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 OR5D13Q8NGL4 314 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 CNBD2Q96M20 576 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 PCGF1Q9BSM1 259 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 SIRPDQ9H106 197 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 RASSF4Q9H2L5 321 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 PCDHB16Q9NRJ7 776 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 TAS2R4Q9NYW5 299 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 ONECUT1Q9UBC0 465 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 DUX4Q9UBX2 424 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 OR14J1Q9UGF5 321 aa11.88□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNF780AO75290 641 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 GPX5O75715 221 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 HAND1O96004 215 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 TK1P04183 234 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 TMEM225BP0DP42 221 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 PRKACAP17612 351 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 CELP19835 753 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 BCL3P20749 454 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 BDKRB2P30411 391 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 ZP1P60852 638 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms