RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 OR2T2Q6IF00 324 aa22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 NCCRP1Q6ZVX7 275 aaPredicted RBP22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 OR11H4Q8NGC9 324 aa22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 SCGB3A2Q96PL1 93 aa22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 CMSS1Q9BQ75 279 aaKnown RBP22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 ZNF71Q9NQZ8 489 aaPredicted RBP22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 NOP16Q9Y3C1 178 aaKnown RBP22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 GSTT2P0CG29 244 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 ZBTB25P24278 435 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 TAS2R31P59538 309 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 TSPAN5P62079 268 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 GNG3P63215 75 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 DHRS2Q13268 280 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 CHRFAM7AQ494W8 412 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 FAM180AQ6UWF9 173 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 BEND4Q6ZU67 534 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 CXorf67Q86X51 503 aaPredicted RBP22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 BHLHE23Q8NDY6 225 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 SULT4A1Q9BR01 284 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 CHIAQ9BZP6 476 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 PPA2Q9H2U2 334 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 ZNF701Q9NV72 531 aaPredicted RBP22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 HSPB11Q9Y547 144 aa22.58■■□□□ 1.2
CCDC88C-205ENST00000553403 ACACAQ13085 2346 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 G3V3Q6 166 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 IL2RAP01589 272 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 HOXD4P09016 255 aaPredicted RBP22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 BCL3P20749 454 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 NPBWR2P48146 333 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 FGF12P61328 243 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 GRK1Q15835 563 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 OVCH2Q7RTZ1 564 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 LYG2Q86SG7 212 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 LHFPL1Q86WI0 220 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 ZNF573Q86YE8 665 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 SLAMF9Q96A28 289 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 ABHD17AQ96GS6 310 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 OPN3Q9H1Y3 402 aaPredicted RBP22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 ZNF581Q9P0T4 197 aa22.57■■□□□ 1.2
CCDC88C-205ENST00000553403 TPD52L2O43399 206 aaKnown RBP22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 TOXO94900 526 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 RAC2P15153 192 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 FUT3P21217 361 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 TIMP3P35625 211 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 UCP2P55851 309 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 UBE2MP61081 183 aaKnown RBP22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 C17orf107Q6ZR85 190 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 RADILQ96JH8 1075 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 FN3KRPQ9HA64 309 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 EHFQ9NZC4 300 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 ITGB1BP2Q9UKP3 347 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 GPR132Q9UNW8 380 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 FAM215AQ9Y5M1 114 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 CFAP47Q6ZTR5 3102 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 CACNA1GO43497 2377 aa22.56■■□□□ 1.2
CCDC88C-205ENST00000553403 GOSR2O14653 212 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 LILRA1O75019 489 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 SELEP16581 610 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 FPR2P25090 351 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 C2orf68Q2NKX9 166 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 SPATA46Q5T0L3 261 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 ZNF324BQ6AW86 544 aaPredicted RBP22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 BHLHA15Q7RTS1 189 aaPredicted RBP22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 UXS1Q8NBZ7 420 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 OR13G1Q8NGZ3 307 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 MARCH1Q8TCQ1 289 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 MAFIPQ8WZ33 124 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 HDHD3Q9BSH5 251 aaPredicted RBP22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 PKIBQ9C010 78 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 RALYQ9UKM9 306 aaKnown RBP22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 OSGIN2Q9Y236 505 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 TRAPPC2LH3BP13 241 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 K7ENP7 123 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 ATP6V1G1O75348 118 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 TUBG1P23258 451 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 UNQ6126/PRO20091Q6UXV3 157 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 PEG10Q86TG7 708 aaKnown RBP22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 FAM169BQ8N8A8 192 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 FAM57AQ8TBR7 257 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 OR2J1Q9GZK6 312 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 TUBG2Q9NRH3 451 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 AMDHD2Q9Y303 409 aa22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 URB1O60287 2271 aaKnown RBP22.55■■□□□ 1.2
CCDC88C-205ENST00000553403 APC2O95996 2303 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 F5H5P2 479 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 MSTNO14793 375 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 SLC22A5O76082 557 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 HLA-AP01891 365 aaKnown RBP22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 FCGR3AP08637 254 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 DAZAP2Q15038 168 aaPredicted RBP22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 TBR1Q16650 682 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 SLC25A40Q8TBP6 338 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 MTCH1Q9NZJ7 389 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 LUZP4Q9P127 313 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 TP53TG5Q9Y2B4 290 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 DSPP15924 2871 aaKnown RBP22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 PKD1L2Q7Z442 2459 aa22.54■■□□□ 1.2
CCDC88C-205ENST00000553403 C9orf170A2RU37 121 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 IQCF6A8MYZ5 107 aa22.53■■□□□ 1.2
CCDC88C-205ENST00000553403 SNAPC5O75971 98 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms