RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GPR148Q8TDV2 347 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 GALNT14Q96FL9 552 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 JSRP1Q96MG2 331 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-216ENST00000552909 GNRHR2Q96P88 292 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 NMNAT3Q96T66 252 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 EIF5A2Q9GZV4 153 aaKnown RBP6.71□□□□□ -1.34
LIMA1-216ENST00000552909 PTGES2Q9H7Z7 377 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 OR5AC2Q9NZP5 309 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 TMED3Q9Y3Q3 217 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 LIPGQ9Y5X9 500 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 CSMD1Q96PZ7 3565 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 A0A1B0GTH9 108 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 OR5H1A6NKK0 313 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ELOA3DA6NLF2 546 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 AGFG2O95081 481 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 PET100P0DJ07 73 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 MPZP25189 248 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 CRABP1P29762 137 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 SNCAP37840 140 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ACAA2P42765 397 aaKnown RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 TAS2R31P59538 309 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 PLAURQ03405 335 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 CD226Q15762 336 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 TOMM34Q15785 309 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ELOA3BQ3SY89 546 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 KRTCAP3Q53RY4 240 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 SPNS3Q6ZMD2 512 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 MARCH3Q86UD3 253 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 FJX1Q86VR8 437 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ADAD2Q8NCV1 583 aaKnown RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ELOA3Q8NG57 546 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 OR4S1Q8NGB4 309 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 OR5R1Q8NH85 324 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF563Q8TA94 476 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 TSEN15Q8WW01 171 aaKnown RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 NTNG2Q96CW9 530 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ADAD1Q96M93 576 aaKnown RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 NOL4LQ96MY1 436 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 YPEL4Q96NS1 127 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ANGPTL4Q9BY76 406 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 GPR61Q9BZJ8 451 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 RTN4RQ9BZR6 473 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ZDHHC11Q9H8X9 412 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 KCNJ16Q9NPI9 418 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 DNAJB12Q9NXW2 375 aaKnown RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 DNAJB11Q9UBS4 358 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 MRM2Q9UI43 246 aaKnown RBP6.7□□□□□ -1.34
LIMA1-216ENST00000552909 ITPR2Q14571 2701 aa6.7□□□□□ -1.34
LIMA1-216ENST00000552909 TMEM212A6NML5 194 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 OR4C45A6NMZ5 311 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 H3BSH0 61 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 TP53I11O14683 189 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 GMFGO60234 142 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BKO60814 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 PTBP3O95758 552 aaKnown RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 GPANK1O95872 356 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 CST4P01036 141 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 CSTBP04080 98 aaKnown RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BJP06899 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 SOD3P08294 240 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 NR2C1P13056 603 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BOP23527 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BBP33778 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 RPL4P36578 427 aaKnown RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BDP58876 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BCP62807 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 PMPCAQ10713 525 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 FHL1Q13642 323 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 C3AR1Q16581 482 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST2H2BEQ16778 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 MIDNQ504T8 468 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 MESTQ5EB52 335 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 PDZD11Q5EBL8 140 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF550Q7Z398 422 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 NUP54Q7Z3B4 507 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 NPEPL1Q8NDH3 523 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 OR10AC1Q8NH08 325 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ROBO4Q8WZ75 1007 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 THRSPQ92748 146 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BHQ93079 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 MCHR2Q969V1 340 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 MRGPRFQ96AM1 343 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF775Q96BV0 537 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BNQ99877 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HIST1H2BMQ99879 126 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 TBL1XR1Q9BZK7 514 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 METTL7AQ9H8H3 244 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 PLSCR2Q9NRY7 297 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 IKZF2Q9UKS7 526 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF835Q9Y2P0 537 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 CSMD2Q7Z408 3487 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 TRGV8A0A0C4DH27 118 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 A8MWP6 167 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 DOK2O60496 412 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 SNRPCP09234 159 aaKnown RBP6.69□□□□□ -1.34
LIMA1-216ENST00000552909 FABP4P15090 132 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 G0S2P27469 103 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 HTR2CP28335 458 aa6.69□□□□□ -1.34
LIMA1-216ENST00000552909 TNFRSF9Q07011 255 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms