RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RCC1P18754 421 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 ACP1P24666 158 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 NUP62P37198 522 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 TSPAN7P41732 249 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 CEBPDP49716 269 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 PIGPP57054 158 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 FAM3AP98173 230 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RAB35Q15286 201 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 TUSC1Q2TAM9 212 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 OR2B11Q5JQS5 317 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 NSUN5P2Q63ZY6 315 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF660Q6AZW8 331 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 PDZD9Q8IXQ8 264 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 SLC38A6Q8IZM9 456 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 SPICQ8N5J4 248 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RNASE11Q8TAA1 199 aaKnown RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 OIT3Q8WWZ8 545 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 HAS2Q92819 552 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RBPMSQ93062 196 aaKnown RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 CHST5Q9GZS9 411 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RNF150Q9ULK6 438 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RABL2BQ9UNT1 228 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RFNGQ9Y644 331 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 hCG_1807616A0A1W2PRN6 198 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RFPL4AA6NLU0 287 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RFPL4AL1F8VTS6 287 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 H0YIZ8 118 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 H3BP45 60 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 PHF1O43189 567 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 HSPA12AO43301 675 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 SYNGR3O43761 229 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 NMBP08949 121 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 CD46P15529 392 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 WT1P19544 449 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 C4BPBP20851 252 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 PTGER4P35408 488 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 THBS4P35443 961 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 HERV-K104P61576 105 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 PRDX4Q13162 271 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 CLN3Q13286 438 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF766Q5HY98 468 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 SIGIRRQ6IA17 410 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 OR2A2Q6IF42 318 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 FAM53AQ6NSI3 398 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 C11orf87Q6NUJ2 197 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 SLC25A42Q86VD7 318 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 TPRX1Q8N7U7 411 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 FDCSPQ8NFU4 85 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 OR10AD1Q8NGE0 317 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 OR5M8Q8NGP6 311 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 OR6S1Q8NH40 331 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 OR51H1Q8NH63 302 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 TMEM230Q96A57 120 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RRNAD1Q96FB5 475 aaKnown RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 LIME1Q9H400 295 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 TREM1Q9NP99 234 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 FOXD3Q9UJU5 478 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-215ENST00000552823 LHX6Q9UPM6 363 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 FAM96BQ9Y3D0 163 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF175Q9Y473 711 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF705EA8MWA4 302 aaPredicted RBP4.84□□□□□ -1.64
LIMA1-215ENST00000552823 SULT1C2O00338 296 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 MFNGO00587 321 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 RHBDL1O75783 438 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 OR2A4O95047 310 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 SP1P08047 785 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 PSMB6P28072 239 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 GNRHRP30968 328 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 MALLQ13021 153 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 AIMP2Q13155 320 aaKnown RBP4.84□□□□□ -1.64
LIMA1-215ENST00000552823 CLINT1Q14677 625 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 HIST3H3Q16695 136 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF826PQ6ZT77 177 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 LYZL2Q7Z4W2 148 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 OSR2Q8N2R0 312 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 HSD17B11Q8NBQ5 300 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 OR52H1Q8NGJ2 320 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 OR1S1Q8NH92 325 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 CPNE4Q96A23 557 aaPredicted RBP4.84□□□□□ -1.64
LIMA1-215ENST00000552823 OR2A7Q96R45 310 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF703Q9H7S9 590 aaPredicted RBP4.84□□□□□ -1.64
LIMA1-215ENST00000552823 MOB1AQ9H8S9 216 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 SLC17A5Q9NRA2 495 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 DUSP13Q9UII6 198 aa4.84□□□□□ -1.64
LIMA1-215ENST00000552823 TRGV5A0A0B4J1U4 118 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 LOC390937A0A1W2PQ73 354 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 ONECUT2O95948 504 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 IGHEP01854 428 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 SCTP09683 121 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 OR5AC1P0C628 307 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 ZNF728P0DKX0 622 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 CPN1P15169 458 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 RAB6AP20340 208 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 APLNRP35414 380 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 AKR1C3P42330 323 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 FAM209AQ5JX71 171 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 CLVS2Q5SYC1 327 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 TMEM88Q6PEY1 159 aa4.83□□□□□ -1.64
LIMA1-215ENST00000552823 ATRAIDQ6UW56 229 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms