RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RRASP10301 218 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 SOX8P57073 446 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 RPS16P62249 146 aaKnown RBP14.31□□□□□ -0.12
CUX1-213ENST00000549414 C19orf48Q6RUI8 117 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 LCN15Q6UWW0 184 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 RAMP1O60894 148 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 SFT2D2O95562 160 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 ONECUT2O95948 504 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 IER2Q9BTL4 223 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 DUS4LO95620 317 aaKnown RBP14.31□□□□□ -0.12
CUX1-213ENST00000549414 TLE4Q04727 773 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 OR5M8Q8NGP6 311 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 FBXO17Q96EF6 278 aa14.31□□□□□ -0.12
CUX1-213ENST00000549414 PIGYQ3MUY2 71 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 DCAF10Q5QP82 559 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 ZNF362Q5T0B9 420 aaPredicted RBP14.3□□□□□ -0.12
CUX1-213ENST00000549414 NR2C2APQ86WQ0 139 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 ADAD2Q8NCV1 583 aaKnown RBP14.3□□□□□ -0.12
CUX1-213ENST00000549414 ADAT1Q9BUB4 502 aaKnown RBP14.3□□□□□ -0.12
CUX1-213ENST00000549414 RTN4RQ9BZR6 473 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 KLK13Q9UKR3 277 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 TRAV39A0A0B4J263 110 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 H2AFB1P0C5Y9 115 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 VSIG10L2P0DP72 767 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 HOXA1P49639 335 aaPredicted RBP14.3□□□□□ -0.12
CUX1-213ENST00000549414 H2BFWTQ7Z2G1 175 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 TMEM123Q8N131 208 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 CYB5R1Q9UHQ9 305 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 AK3Q9UIJ7 227 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 ERRFI1Q9UJM3 462 aaPredicted RBP14.3□□□□□ -0.12
CUX1-213ENST00000549414 PRELID3BQ9Y3B1 194 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 TXNL1O43396 289 aa14.3□□□□□ -0.12
CUX1-213ENST00000549414 RNPS1Q15287 305 aaKnown RBP14.3□□□□□ -0.12
CUX1-213ENST00000549414 RCL1Q9Y2P8 373 aaKnown RBP14.3□□□□□ -0.12
CUX1-213ENST00000549414 DOCK7Q96N67 2140 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 KCNAB3O43448 404 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 OR5AC1P0C628 307 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 ROM1Q03395 351 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 PRAMEF5Q5TYX0 476 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 PRAMEF6Q5VXH4 476 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 CLEC18BQ6UXF7 455 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 ZFP82Q8N141 532 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 NKX6-2Q9C056 277 aaPredicted RBP14.29□□□□□ -0.12
CUX1-213ENST00000549414 GPR35Q9HC97 309 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 NDRG3Q9UGV2 375 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 PMS2P1A4D2B8 440 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 TRIM64BA6NI03 449 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 CPN1P15169 458 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 F2RL1P55085 397 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 ZP4Q12836 540 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 DCAF12L2Q5VW00 463 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 PRRX2Q99811 253 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 KCNK7Q9Y2U2 307 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 IGHV1-45A0A0A0MS14 117 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 FAM90A27PA6NNH2 459 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 ZNF724A8MTY0 619 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 TERTO14746 1132 aaKnown RBP14.29□□□□□ -0.12
CUX1-213ENST00000549414 ZNF250P15622 560 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 AKR1C3P42330 323 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 ZNF519Q8TB69 540 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 RGP1Q92546 391 aaPredicted RBP14.29□□□□□ -0.12
CUX1-213ENST00000549414 TMEM38BQ9NVV0 291 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 LHFPL6Q9Y693 200 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 TAAR5O14804 337 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 IGF2P01344 180 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 ZNF83P51522 516 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 HIKESHIQ53FT3 197 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 ADAM5Q6NVV9 412 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 FAM58AQ8N1B3 248 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 SF3B5Q9BWJ5 86 aaKnown RBP14.29□□□□□ -0.12
CUX1-213ENST00000549414 PLEKHA2Q9HB19 425 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 TMEM100Q9NV29 134 aa14.29□□□□□ -0.12
CUX1-213ENST00000549414 KRASP01116 189 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 IGHV3-13P01766 116 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 IGHV3-7P01780 117 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 IFI6P09912 130 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 PGA4P0DJD7 388 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 PGA3P0DJD8 388 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 GGNBP1Q5YKI7 109 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 THNSL2Q86YJ6 484 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 SLC39A7Q92504 469 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 C14orf79Q96F83 325 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 CXorf58Q96LI9 332 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 OR2H1Q9GZK4 316 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 TGIF2Q9GZN2 237 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 ANXA10Q9UJ72 324 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 SPRY3O43610 288 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 TPPPO94811 219 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 CRYABP02511 175 aaKnown RBP14.28□□□□□ -0.12
CUX1-213ENST00000549414 RAB11AP62491 216 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 RPP30P78346 268 aaKnown RBP14.28□□□□□ -0.12
CUX1-213ENST00000549414 ZNF816Q0VGE8 651 aaPredicted RBP14.28□□□□□ -0.12
CUX1-213ENST00000549414 HES1Q14469 280 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 ZNF574Q6ZN55 896 aaPredicted RBP14.28□□□□□ -0.12
CUX1-213ENST00000549414 ZNF426Q9BUY5 554 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 IGKV3D-11A0A0A0MRZ8 115 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 LOC101059948A0A1B0GTJ6 334 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 CALCRP30988 508 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 PDZK1IP1Q13113 114 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 OR2M7Q8NG81 312 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms