RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MPIP34949 423 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 DNASE1L1P49184 302 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 TUFMP49411 452 aaKnown RBP2.23□□□□□ -2.05
VPS29-205ENST00000548539 SLC18A1P54219 525 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 ELOCQ15369 112 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 SPINT4Q6UDR6 99 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 C16orf47Q6ZP98 133 aaPredicted RBP2.23□□□□□ -2.05
VPS29-205ENST00000548539 ZDHHC22Q8N966 263 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 OR8G5Q8NG78 346 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 RBPMSQ93062 196 aaKnown RBP2.23□□□□□ -2.05
VPS29-205ENST00000548539 C19orf60Q96EN9 201 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 SEC22CQ9BRL7 303 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 API5Q9BZZ5 524 aaKnown RBP2.23□□□□□ -2.05
VPS29-205ENST00000548539 SDHAF3Q9NRP4 125 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 NLE1Q9NVX2 485 aaPredicted RBP2.23□□□□□ -2.05
VPS29-205ENST00000548539 ZNF706Q9Y5V0 76 aaPredicted RBP2.23□□□□□ -2.05
VPS29-205ENST00000548539 BRWD3Q6RI45 1802 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 RPRD2Q5VT52 1461 aaKnown RBP2.22□□□□□ -2.05
VPS29-205ENST00000548539 IGKV1D-17A0A075B6S4 117 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 LOC389332A0A1B0GUA5 103 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 RBFOX3A6NFN3 312 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 ZNF879B4DU55 563 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 UPK1AO00322 258 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 IGKV1-17P01599 117 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 IGLV3-19P01714 112 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 M6PRP20645 277 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 TGM4P49221 684 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 DSTNP60981 165 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 VSNL1P62760 191 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 FAM53BQ14153 422 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 CEACAM16Q2WEN9 425 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 PRR9Q5T870 116 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 TRMT10CQ7L0Y3 403 aaKnown RBP2.22□□□□□ -2.05
VPS29-205ENST00000548539 CDRT4Q8N9R6 151 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 SPERTQ8NA61 448 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 DRAXINQ8NBI3 349 aaPredicted RBP2.22□□□□□ -2.05
VPS29-205ENST00000548539 OR1P1Q8NH06 330 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 OR8K3Q8NH51 312 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 OR51Q1Q8NH59 317 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 FXYD5Q96DB9 178 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 FMC1Q96HJ9 113 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 CFAP53Q96M91 514 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 CATSPER2Q96P56 530 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 C1orf50Q9BV19 199 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 WDR55Q9H6Y2 383 aaPredicted RBP2.22□□□□□ -2.05
VPS29-205ENST00000548539 TMBIM4Q9HC24 238 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 ABCB9Q9NP78 766 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 IFT46Q9NQC8 304 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 OR2S2Q9NQN1 319 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 PARP11Q9NR21 331 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 IL37Q9NZH6 218 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 DNAJC27Q9NZQ0 273 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 POFUT2Q9Y2G5 429 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 ANKRD12Q6UB98 2062 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 COL27A1Q8IZC6 1860 aaPredicted RBP2.22□□□□□ -2.05
VPS29-205ENST00000548539 COL1A2P08123 1366 aa2.22□□□□□ -2.05
VPS29-205ENST00000548539 SETD1AO15047 1707 aaKnown RBP2.21□□□□□ -2.06
VPS29-205ENST00000548539 IGHV1-46P01743 117 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 IGLV7-43P04211 117 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 IGKV5-2P06315 115 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 OR5AC1P0C628 307 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 XKP51811 444 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 MEF2CQ06413 473 aaPredicted RBP2.21□□□□□ -2.06
VPS29-205ENST00000548539 TRDNQ13061 729 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 STX3Q13277 289 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 SSX1Q16384 188 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 TMEM241Q24JQ0 296 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 ZNF404Q494X3 552 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 ZNF773Q6PK81 442 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 TMEM136Q6ZRR5 245 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 FA2HQ7L5A8 372 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 SSX6Q7RTT6 188 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 LINC00596Q86U02 117 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 CYP4Z1Q86W10 505 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 SLC26A10Q8NG04 563 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 OR5H2Q8NGV7 314 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 ZNF721Q8TF20 911 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 BLNKQ8WV28 456 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 ITLN2Q8WWU7 325 aaPredicted RBP2.21□□□□□ -2.06
VPS29-205ENST00000548539 SRRQ9GZT4 340 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 NXF2Q9GZY0 626 aaKnown RBP2.21□□□□□ -2.06
VPS29-205ENST00000548539 TMEM38BQ9NVV0 291 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 RBM12B-AS1Q9P1G2 102 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 CYB5R1Q9UHQ9 305 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 MRM2Q9UI43 246 aaKnown RBP2.21□□□□□ -2.06
VPS29-205ENST00000548539 SLC22A7Q9Y694 548 aa2.21□□□□□ -2.06
VPS29-205ENST00000548539 IZUMO1RA6ND01 250 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 OR2AT4A6NND4 320 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 C9JQL5 133 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 RGS5O15539 181 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 SNRPAP09012 282 aaKnown RBP2.2□□□□□ -2.06
VPS29-205ENST00000548539 TEAD1P28347 426 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 IL12BP29460 328 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 SLC6A1P30531 599 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 CCL23P55773 120 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 RAB38P57729 211 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 LINC00303Q3SY05 128 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 UBE2NLQ5JXB2 153 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 ZNF555Q8NEP9 628 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 OR2K2Q8NGT1 345 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms