RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 BMXP51813 675 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 RPL31P62899 125 aaKnown RBP6.86□□□□□ -1.31
USP28-215ENST00000545608 ZNF273Q14593 569 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 PTGES3Q15185 160 aaKnown RBP6.86□□□□□ -1.31
USP28-215ENST00000545608 ZNF829Q3KNS6 432 aaPredicted RBP6.86□□□□□ -1.31
USP28-215ENST00000545608 ZNF684Q5T5D7 378 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 TMEM42Q69YG0 159 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 PLEKHG7Q6ZR37 379 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 Q6ZTK2 550 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 LHFPL4Q7Z7J7 247 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 SPATA24Q86W54 205 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 DYNAPQ8N1N2 210 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 ZNF561Q8N587 486 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 OR14K1Q8NGZ2 314 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 ASB17Q8WXJ9 295 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 CFHR4Q92496 578 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 NRIP2Q9BQI9 281 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 TEX12Q9BXU0 123 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 Q9H521 79 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 HEXA-AS1Q9H8Q6 139 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 DNAJB9Q9UBS3 223 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 V9GYS6 101 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 VWFP04275 2813 aa6.86□□□□□ -1.31
USP28-215ENST00000545608 TCRBV3S1A0A5B6 114 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 PQLC2LA1A4F0 135 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 MEX3AA1L020 520 aaKnown RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 FAM90A8PA6NJQ4 464 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 LOC110117498-PIK3R3F6TDL0 507 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 M0R129 80 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 SLC1A7O00341 560 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 NXPH2O95156 264 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 TK1P04183 234 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 PIPP12273 146 aaPredicted RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 RAB13P51153 203 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 DLX6P56179 175 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 CXCR4P61073 352 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 EFNB1P98172 346 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 FLOT2Q14254 428 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 RCN1Q15293 331 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 AANATQ16613 207 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 SMIM21Q3B7S5 101 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 BEAN1Q3B7T3 259 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 DNAL1Q4LDG9 190 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 CLVS2Q5SYC1 327 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 LDLRAD2Q5SZI1 272 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 LCN1P1Q5VSP4 162 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 AADACL4Q5VUY2 407 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 FAHD1Q6P587 224 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 ZNF322Q6U7Q0 402 aaPredicted RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 ZNF782Q6ZMW2 699 aaPredicted RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 Q6ZSR3 168 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 MEPCEQ7L2J0 689 aaKnown RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 ANGPTL5Q86XS5 388 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 ZNF573Q86YE8 665 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 CALHM1Q8IU99 346 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 SLC35F2Q8IXU6 374 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 ELMOD2Q8IZ81 293 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 LYG1Q8N1E2 194 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 KLHDC1Q8N7A1 406 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 OR4C13Q8NGP0 309 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 OR2T6Q8NHC8 308 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 CNN2Q99439 309 aaKnown RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 RANBP3Q9H6Z4 567 aaPredicted RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 ADGRL4Q9HBW9 690 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 HES4Q9HCC6 221 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 USE1Q9NZ43 259 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 OR14J1Q9UGF5 321 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 MRM2Q9UI43 246 aaKnown RBP6.85□□□□□ -1.31
USP28-215ENST00000545608 OR52A1Q9UKL2 312 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 GTF2A1LQ9UNN4 478 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 SLC22A13Q9Y226 551 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 TMEM14AQ9Y6G1 99 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 R4GMQ9 66 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 TGP01266 2768 aa6.85□□□□□ -1.31
USP28-215ENST00000545608 A0A1W2PPH5 198 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 C17orf98A8MV24 154 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 F8VVB4 439 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 F8VWA3 439 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 DLGAP1O14490 977 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 MITFO75030 526 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 PRB2P02812 416 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 OPN1MWP04001 364 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 OPN1MW2P0DN77 364 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 OPN1MW3P0DN78 364 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 VSIG10L2P0DP72 767 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 HOXB6P17509 224 aaKnown RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 MPZP25189 248 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 EPHA2P29317 976 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 LGALS4P56470 323 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 ERVK11-1P61568 191 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 ESRRGP62508 458 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 COL10A1Q03692 680 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 HABP2Q14520 560 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 PLA1AQ53H76 456 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 BCL2L15Q5TBC7 163 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 C11orf88Q6PI97 169 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 CCBE1Q6UXH8 406 aaPredicted RBP6.84□□□□□ -1.31
USP28-215ENST00000545608 SSX6Q7RTT6 188 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 TCEANCQ8N8B7 351 aa6.84□□□□□ -1.31
USP28-215ENST00000545608 TRMT10AQ8TBZ6 339 aaKnown RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms