RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SEC61A2Q9H9S3 476 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 PNRC2Q9NPJ4 139 aaKnown RBP7.04□□□□□ -1.28
NEDD8-207ENST00000533242 SLC17A5Q9NRA2 495 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 ASH2LQ9UBL3 628 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.04□□□□□ -1.281e-15■□□□□ 10.2
NEDD8-207ENST00000533242 ARFGEF3Q5TH69 2177 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 LOC100509620A0A075B734 347 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 IGKV3D-15A0A087WSY6 115 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 IGHV4-61A0A0C4DH41 118 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 A0A1W2PP11 408 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 ARPC5O15511 151 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 RAB3DO95716 219 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 TGFAP01135 160 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 AMY2AP04746 511 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 VSIG8P0DPA2 414 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 LAP3P28838 519 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 GNALP38405 381 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 MFSD13AQ14CX5 517 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 PHYHD1Q5SRE7 291 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 ATPAF1Q5TC12 328 aaPredicted RBP7.04□□□□□ -1.28
NEDD8-207ENST00000533242 ABLIM2Q6H8Q1 611 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 DNM1P34Q6PK57 102 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 TMED4Q7Z7H5 227 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 NAA40Q86UY6 237 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.04□□□□□ -1.28
NEDD8-207ENST00000533242 NOXO1Q8NFA2 376 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 C1orf159Q96HA4 380 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 TAS2R8Q9NYW2 309 aa7.04□□□□□ -1.28
NEDD8-207ENST00000533242 PLCE1Q9P212 2302 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 A0A0A6YYD4 124 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 POM121CA8CG34 1229 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 TEX46H3BTG2 121 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 SYT7O43581 403 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 LY6HO94772 140 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 UBCP0CG48 685 aaKnown RBP7.03□□□□□ -1.28
NEDD8-207ENST00000533242 GNB3P16520 340 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 NFYAP23511 347 aaPredicted RBP7.03□□□□□ -1.28
NEDD8-207ENST00000533242 FAUP35544 74 aaKnown RBP7.03□□□□□ -1.28
NEDD8-207ENST00000533242 RAP2BP61225 183 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 GABRA6Q16445 453 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 SWI5Q1ZZU3 235 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 ZNF260Q3ZCT1 412 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 C4orf46Q504U0 113 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 C3orf33Q6P1S2 294 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 DEGS2Q6QHC5 323 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 RFPL4BQ6ZWI9 263 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 UEVLDQ8IX04 471 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.03□□□□□ -1.28
NEDD8-207ENST00000533242 TMEM104Q8NE00 496 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 OR8B12Q8NGG6 310 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 AQP3Q92482 292 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 THRSPQ92748 146 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 APH1AQ96BI3 265 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 ZNF775Q96BV0 537 aaPredicted RBP7.03□□□□□ -1.28
NEDD8-207ENST00000533242 C1orf147Q96MC9 270 aaPredicted RBP7.03□□□□□ -1.28
NEDD8-207ENST00000533242 C1orf198Q9H425 327 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 GPN1Q9HCN4 374 aaPredicted RBP7.03□□□□□ -1.28
NEDD8-207ENST00000533242 GLTPQ9NZD2 209 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 AMDHD2Q9Y303 409 aa7.03□□□□□ -1.28
NEDD8-207ENST00000533242 FXYD6-FXYD2A0A087WZ82 144 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 TRAV14DV4A0A0A6YYC5 116 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 TMEM82A0PJX8 343 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 OR4E1P0C645 316 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 BDKRB2P30411 391 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 ZNF121P58317 390 aaPredicted RBP7.02□□□□□ -1.28
NEDD8-207ENST00000533242 CLRN1P58418 232 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 TAS2R19P59542 299 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 CSNK2A1P68400 391 aaPredicted RBP7.02□□□□□ -1.28
NEDD8-207ENST00000533242 HLXQ14774 488 aaPredicted RBP7.02□□□□□ -1.28
NEDD8-207ENST00000533242 MST1LQ2TV78 715 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 SCGB2B2Q4G0G5 96 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 NHLRC3Q5JS37 347 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 CLLU1Q5K131 121 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 TMEM244Q5VVB8 128 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 ZNF529Q6P280 563 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 SLC25A47Q6Q0C1 308 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 CRIP3Q6Q6R5 217 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 COMMD7Q86VX2 200 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 OR5AS1Q8N127 324 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 C17orf78Q8N4C9 275 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 WDR31Q8NA23 367 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 TMEM229BQ8NBD8 167 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 OR1M1Q8NGA1 313 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 TNFAIP8L1Q8WVP5 186 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 FXYD6Q9H0Q3 95 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 FN3KRPQ9HA64 309 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 TMEM138Q9NPI0 162 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 UBQLN2Q9UHD9 624 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 VSIG4Q9Y279 399 aa7.02□□□□□ -1.28
NEDD8-207ENST00000533242 NOSIPQ9Y314 301 aaKnown RBP7.02□□□□□ -1.28
NEDD8-207ENST00000533242 A0A1W2PR80 420 aa7.02□□□□□ -1.29
NEDD8-207ENST00000533242 ZNF736B4DX44 427 aaPredicted RBP7.02□□□□□ -1.29
NEDD8-207ENST00000533242 L7N2F9 121 aa7.02□□□□□ -1.29
NEDD8-207ENST00000533242 CCSO14618 274 aa7.02□□□□□ -1.29
NEDD8-207ENST00000533242 SSX5O60225 188 aa7.02□□□□□ -1.29
NEDD8-207ENST00000533242 CD74P04233 296 aa7.02□□□□□ -1.29
NEDD8-207ENST00000533242 QDPRP09417 244 aa7.02□□□□□ -1.29
NEDD8-207ENST00000533242 SRP14P37108 136 aaKnown RBP7.02□□□□□ -1.29
NEDD8-207ENST00000533242 OR3A4PP47883 348 aa7.02□□□□□ -1.29
NEDD8-207ENST00000533242 ACTBP60709 375 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms