RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CXXC4Q9H2H0 198 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 ESRP2Q9H6T0 727 aaKnown RBP18.05■□□□□ 0.48
VPS28-212ENST00000530836 CRYBG3Q68DQ2 2970 aa18.04■□□□□ 0.48
VPS28-212ENST00000530836 IGLV3-9A0A075B6K5 115 aa18.04■□□□□ 0.48
VPS28-212ENST00000530836 SERPINE3A8MV23 424 aa18.04■□□□□ 0.48
VPS28-212ENST00000530836 TPD52L2O43399 206 aaKnown RBP18.04■□□□□ 0.48
VPS28-212ENST00000530836 CA11O75493 328 aa18.04■□□□□ 0.48
VPS28-212ENST00000530836 PTHLHP12272 177 aa18.04■□□□□ 0.48
VPS28-212ENST00000530836 BLVRBP30043 206 aaPredicted RBP18.04■□□□□ 0.48
VPS28-212ENST00000530836 FAUP35544 74 aaKnown RBP18.04■□□□□ 0.48
VPS28-212ENST00000530836 NHLRC3Q5JS37 347 aa18.04■□□□□ 0.48
VPS28-212ENST00000530836 HAGHLQ6PII5 290 aaPredicted RBP18.04■□□□□ 0.48
VPS28-212ENST00000530836 HSF4Q9ULV5 492 aa18.04■□□□□ 0.48
VPS28-212ENST00000530836 FAM240BA0A1B0GVZ2 78 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 TMEM235A6NFC5 223 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 VSTM5A8MXK1 200 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 SFTPBP07988 381 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 SRP9P49458 86 aaKnown RBP18.03■□□□□ 0.48
VPS28-212ENST00000530836 TMEM50BP56557 158 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 Q8IYB0 196 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 ZNF295-AS1Q8N0V1 137 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 PIAS4Q8N2W9 510 aaPredicted RBP18.03■□□□□ 0.48
VPS28-212ENST00000530836 MARVELD3Q96A59 401 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 ZNF442Q9H7R0 627 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 ZMAT3Q9HA38 289 aaKnown RBP18.03■□□□□ 0.48
VPS28-212ENST00000530836 COPZ2Q9P299 210 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 ST3GAL6Q9Y274 331 aa18.03■□□□□ 0.48
VPS28-212ENST00000530836 HEATR1Q9H583 2144 aaKnown RBP18.03■□□□□ 0.48
VPS28-212ENST00000530836 CELSR2Q9HCU4 2923 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 DPRXA6NFQ7 191 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 MFNGO00587 321 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 ABCD4O14678 606 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 ACAA1P09110 424 aaPredicted RBP18.02■□□□□ 0.48
VPS28-212ENST00000530836 GNB3P16520 340 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 SLC6A1P30531 599 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 CBX5P45973 191 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 GNG2P59768 71 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 FGF12P61328 243 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 BSPH1Q075Z2 132 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 PCGF3Q3KNV8 242 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 TMEM255AQ5JRV8 349 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 PLAC9Q5JTB6 97 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 LINC00596Q86U02 117 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 FBXL14Q8N1E6 418 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 FAIMQ9NVQ4 179 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 DUSP13Q9UII6 198 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 CENPEQ02224 2701 aa18.02■□□□□ 0.48
VPS28-212ENST00000530836 PLSCR5A0PG75 271 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 RCVRNP35243 200 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 RBM11P57052 281 aaKnown RBP18.01■□□□□ 0.47
VPS28-212ENST00000530836 GUCA2AQ02747 115 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 SLC22A25Q6T423 547 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 PLET1Q6UQ28 207 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 SLAMF9Q96A28 289 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 ARHGAP5-AS1Q96IT6 56 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 NEDD4LQ96PU5 975 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 MTCH1Q9NZJ7 389 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 FZR1Q9UM11 496 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 PRR14LQ5THK1 2151 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 GABRR1P24046 479 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 TAS2R19P59542 299 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 OLFML2AQ68BL7 652 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 TMEM229BQ8NBD8 167 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 MRPL24Q96A35 216 aaKnown RBP18.01■□□□□ 0.47
VPS28-212ENST00000530836 C14orf79Q96F83 325 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 PECRQ9BY49 303 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 CA10Q9NS85 328 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 PLEKHJ1Q9NW61 149 aa18.01■□□□□ 0.47
VPS28-212ENST00000530836 A6NNC1 897 aa18■□□□□ 0.47
VPS28-212ENST00000530836 MLNRO43193 412 aa18■□□□□ 0.47
VPS28-212ENST00000530836 BCL3P20749 454 aa18■□□□□ 0.47
VPS28-212ENST00000530836 PMELP40967 661 aa18■□□□□ 0.47
VPS28-212ENST00000530836 ZNF154Q13106 437 aa18■□□□□ 0.47
VPS28-212ENST00000530836 TAF9Q16594 264 aa18■□□□□ 0.47
VPS28-212ENST00000530836 NCMAPQ5T1S8 102 aa18■□□□□ 0.47
VPS28-212ENST00000530836 SCCPDHQ8NBX0 429 aa18■□□□□ 0.47
VPS28-212ENST00000530836 ST8SIA4Q92187 359 aa18■□□□□ 0.47
VPS28-212ENST00000530836 TLNRD1Q9H1K6 362 aa18■□□□□ 0.47
VPS28-212ENST00000530836 DPAGT1Q9H3H5 408 aa18■□□□□ 0.47
VPS28-212ENST00000530836 HRASLSQ9HDD0 168 aa18■□□□□ 0.47
VPS28-212ENST00000530836 DCHS2Q6V1P9 2916 aa18■□□□□ 0.47
VPS28-212ENST00000530836 FAM221AA4D161 298 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 SYNGR1O43759 233 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 AKAIN1P0CW23 69 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 SPNP16150 400 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 NPBWR2P48146 333 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 MPV17LQ2QL34 196 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 VHLLQ6RSH7 139 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 Q6ZR03 302 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 TRAPPC6BQ86SZ2 158 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 WDR86Q86TI4 376 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 KCNK7Q9Y2U2 307 aa17.99■□□□□ 0.47
VPS28-212ENST00000530836 DEFB108AA8MXU0 73 aa17.98■□□□□ 0.47
VPS28-212ENST00000530836 H0YL77 283 aa17.98■□□□□ 0.47
VPS28-212ENST00000530836 GEMIN2O14893 280 aaKnown RBP17.98■□□□□ 0.47
VPS28-212ENST00000530836 SSX4O60224 188 aa17.98■□□□□ 0.47
VPS28-212ENST00000530836 GOSR1O95249 250 aa17.98■□□□□ 0.47
VPS28-212ENST00000530836 TBPP20226 339 aa17.98■□□□□ 0.47
VPS28-212ENST00000530836 ARFRP1Q13795 201 aa17.98■□□□□ 0.47
VPS28-212ENST00000530836 MSMPQ1L6U9 139 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms