RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FAM90A5PA8MXJ8 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A23PA8MXZ1 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 E7EQL1 145 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 MFNGO00587 321 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 SPRY3O43610 288 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 C1QL1O75973 258 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A15PP0C7V4 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A13PP0C7W8 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A14PP0C7W9 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A24PP0C7X0 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 SERPINF1P36955 418 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 GNG2P59768 71 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 PRAMEF6Q5VXH4 476 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 NEDD4LQ96PU5 975 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.83■□□□□ 0.45
VPS28-208ENST00000527797 PLEKHJ1Q9NW61 149 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 TAS2R8Q9NYW2 309 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 ZDHHC8Q9ULC8 765 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 KCNK7Q9Y2U2 307 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 CACNG2Q9Y698 323 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 CENPXA8MT69 81 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 ACAA1P09110 424 aaPredicted RBP17.83■□□□□ 0.44
VPS28-208ENST00000527797 KIR2DL3P43628 341 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 ACTBP60709 375 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 ACTG1P63261 375 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 DYRK1AQ13627 763 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 KLF9Q13886 244 aaPredicted RBP17.83■□□□□ 0.44
VPS28-208ENST00000527797 NKAPLQ5M9Q1 402 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 SIGIRRQ6IA17 410 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 RTN4RL2Q86UN3 420 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 C11orf53Q8IXP5 236 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 FAM58AQ8N1B3 248 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 PIK3IP1Q96FE7 263 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 HSF4Q9ULV5 492 aa17.83■□□□□ 0.44
VPS28-208ENST00000527797 ANKRD20A5PA0PJZ0 165 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 MEIS3P1A6NDR6 274 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 SERPINE3A8MV23 424 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 DEFB108AA8MXU0 73 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 SIAH2O43255 324 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 CSF1P09603 554 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 PGA5P0DJD9 388 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 PRKACAP17612 351 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 SNU13P55769 128 aaKnown RBP17.82■□□□□ 0.44
VPS28-208ENST00000527797 Q6ZNX1 250 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 TRAPPC6BQ86SZ2 158 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 CELF2-AS1Q8N7Q2 184 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 NEUROG1Q92886 237 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 EMG1Q92979 244 aaKnown RBP17.82■□□□□ 0.44
VPS28-208ENST00000527797 HS3ST6Q96QI5 342 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 NRIP2Q9BQI9 281 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 C7orf50Q9BRJ6 194 aaKnown RBP17.82■□□□□ 0.44
VPS28-208ENST00000527797 UFSP2Q9NUQ7 469 aa17.82■□□□□ 0.44
VPS28-208ENST00000527797 NOS1APO75052 506 aaPredicted RBP17.81■□□□□ 0.44
VPS28-208ENST00000527797 PTBP3O95758 552 aaKnown RBP17.81■□□□□ 0.44
VPS28-208ENST00000527797 IGHV1-46P01743 117 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 TNFSF4P23510 183 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 APOBEC3AP31941 199 aaPredicted RBP17.81■□□□□ 0.44
VPS28-208ENST00000527797 RFX2P48378 723 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 ERVK11-1P61568 191 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 ARFRP1Q13795 201 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 MPPED2Q15777 294 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 PCGF3Q3KNV8 242 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 OLFML2AQ68BL7 652 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 C6orf201Q7Z4U5 140 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 NRARPQ7Z6K4 114 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 LINC00596Q86U02 117 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 POC1AQ8NBT0 407 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 NUDCD2Q8WVJ2 157 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 ST8SIA4Q92187 359 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 MEGF10Q96KG7 1140 aa17.81■□□□□ 0.44
VPS28-208ENST00000527797 H3BUI4 141 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 PDCD6O75340 191 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 CA11O75493 328 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 OR7C1O76099 320 aaPredicted RBP17.8■□□□□ 0.44
VPS28-208ENST00000527797 PLAUP00749 431 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 FUT3P21217 361 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 CHATP28329 748 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 PDCD1Q15116 288 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 MPV17LQ2QL34 196 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 ZNF826PQ6ZT77 177 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 OR2V2Q96R30 315 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 DIRC2Q96SL1 478 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 C1orf123Q9NWV4 160 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 CISD1Q9NZ45 108 aaKnown RBP17.8■□□□□ 0.44
VPS28-208ENST00000527797 SSX4O60224 188 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 NXPH2O95156 264 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 LOXP28300 417 aaPredicted RBP17.8■□□□□ 0.44
VPS28-208ENST00000527797 TNFAIP6P98066 277 aaPredicted RBP17.8■□□□□ 0.44
VPS28-208ENST00000527797 IL13RA2Q14627 380 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 WDR82Q6UXN9 313 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 ENKURQ8TC29 256 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 DEDD2Q8WXF8 326 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 TMEM204Q9BSN7 226 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 ZNF581Q9P0T4 197 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 IL36RNQ9UBH0 155 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 IL19Q9UHD0 177 aa17.8■□□□□ 0.44
VPS28-208ENST00000527797 CADP27708 2225 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 A0A1B0GVG6 124 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 hCG_1807616A0A1W2PRN6 198 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 TPD52L2O43399 206 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 420.5 ms