RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TEX30Q5JUR7 227 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 C16orf47Q6ZP98 133 aaPredicted RBP8.47□□□□□ -1.05
VCAN-210ENST00000513960 CYB561D1Q8N8Q1 229 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 PLPP5Q8NEB5 264 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 ZNF519Q8TB69 540 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 Q8WTZ3 238 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 IGLV1-36A0A0B4J1U3 117 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 WISP1O95388 367 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 SOD3P08294 240 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 ZNF728P0DKX0 622 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 EPHA1P21709 976 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 EFNA3P52797 238 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 HERV-K104P61576 105 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 CFHR1Q03591 330 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 NKAIN1Q4KMZ8 207 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 FDX2Q6P4F2 183 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 REC114Q7Z4M0 266 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 CHST5Q9GZS9 411 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 PLEKHA2Q9HB19 425 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 SRPK3Q9UPE1 567 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 WSB1Q9Y6I7 421 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 RBFOX3A6NFN3 312 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 A6NIZ1 184 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 DBX1A6NMT0 343 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 BCAT2O15382 392 aaPredicted RBP8.47□□□□□ -1.05
VCAN-210ENST00000513960 ST8SIA3O43173 380 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 GNRHRP30968 328 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 RAP1BP61224 184 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 PKIAP61925 76 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 OR8G1Q15617 311 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 TAF9Q16594 264 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 KMT5CQ86Y97 462 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 RTN4IP1Q8WWV3 396 aaPredicted RBP8.47□□□□□ -1.05
VCAN-210ENST00000513960 MISP3Q96FF7 219 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 FAM210BQ96KR6 192 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 SUSD2Q9UGT4 822 aa8.47□□□□□ -1.05
VCAN-210ENST00000513960 UBE2J1Q9Y385 318 aaPredicted RBP8.47□□□□□ -1.05
VCAN-210ENST00000513960 NSG1A0A0A6YYJ2 146 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 IGKV1D-43A0A0B4J1Z2 117 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 H3BP45 60 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 ANGPTL7O43827 346 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 NPIPB7O75200 414 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 DEDDO75618 318 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 MBPP02686 304 aaPredicted RBP8.46□□□□□ -1.05
VCAN-210ENST00000513960 TRGC1P0CF51 173 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 PGA4P0DJD7 388 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 PGA5P0DJD9 388 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 OR5H8P0DN80 308 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 PAX6P26367 422 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 FOXL2P58012 376 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 CCL20P78556 96 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 MRPS34P82930 218 aaKnown RBP8.46□□□□□ -1.05
VCAN-210ENST00000513960 FAM3AP98173 230 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 C17orf67Q0P5P2 114 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 TMEM268Q5VZI3 342 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 ZNF880Q6PDB4 577 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 MRPL41Q8IXM3 137 aaKnown RBP8.46□□□□□ -1.05
VCAN-210ENST00000513960 C1orf87Q8N0U7 546 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 TMEM156Q8N614 296 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 DYRK2Q92630 601 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 GTF3AQ92664 365 aaKnown RBP8.46□□□□□ -1.05
VCAN-210ENST00000513960 CHST11Q9NPF2 352 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 PISDQ9UG56 409 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 EML5Q05BV3 1969 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 A0A0A6YYD4 124 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 ARGFXA6NJG6 315 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 SSSCA1O60232 199 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BKO60814 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BJP06899 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 MMP9P14780 707 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BOP23527 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BBP33778 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 ZNF121P58317 390 aaPredicted RBP8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BDP58876 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BCP62807 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 RUNX1Q01196 453 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 ROM1Q03395 351 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST2H2BEQ16778 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.46□□□□□ -1.05
VCAN-210ENST00000513960 LCN15Q6UWW0 184 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 NEK7Q8TDX7 302 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BHQ93079 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 ZNF501Q96CX3 271 aaPredicted RBP8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BNQ99877 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 HIST1H2BMQ99879 126 aa8.46□□□□□ -1.05
VCAN-210ENST00000513960 FIGNL2A6NMB9 653 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 LDLRAD4O15165 306 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 DAP3P51398 398 aaKnown RBP8.46□□□□□ -1.06
VCAN-210ENST00000513960 TMEM50BP56557 158 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 HEPN1Q6WQI6 88 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 OR14L1PQ8NHC6 308 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 TVP23CQ96ET8 276 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 TAAR9Q96RI9 348 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 SDHAF3Q9NRP4 125 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 KLRF1Q9NZS2 232 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 STRAPQ9Y3F4 350 aaKnown RBP8.46□□□□□ -1.06
VCAN-210ENST00000513960 RER1O15258 196 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 PPIHO43447 177 aaKnown RBP8.46□□□□□ -1.06
VCAN-210ENST00000513960 GPR137BO60478 399 aa8.46□□□□□ -1.06
VCAN-210ENST00000513960 DANCRP0C864 163 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms