RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 METTL8Q9H825 291 aaKnown RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 NMNAT1Q9HAN9 279 aaPredicted RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 SLC25A37Q9NYZ2 338 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 DUX4Q9UBX2 424 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 PITPNC1Q9UKF7 332 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 SLC7A7Q9UM01 511 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 SIGLEC9Q9Y336 463 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 RRP15Q9Y3B9 282 aaKnown RBP3.14□□□□□ -1.91
USP54-217ENST00000498213 OR2W1Q9Y3N9 320 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 MAB21L2Q9Y586 359 aa3.14□□□□□ -1.91
USP54-217ENST00000498213 ARHGAP32A7KAX9 2087 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 DYNC1H1Q14204 4646 aaKnown RBP3.13□□□□□ -1.91
USP54-217ENST00000498213 CENPVL3A0A0U1RRI6 287 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 A0A1W2PRQ8 180 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 OOEPA6NGQ2 149 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 C11orf98E9PRG8 122 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 VCYO14598 125 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 ARPC3O15145 178 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 XRCC2O43543 280 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 DOK2O60496 412 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 TPST2O60704 377 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 LYPD3O95274 346 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 LY6G6CO95867 125 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 PAHP00439 452 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 APOHP02749 345 aaPredicted RBP3.13□□□□□ -1.91
USP54-217ENST00000498213 RBP4P02753 201 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CCDC159P0C7I6 412 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 AZGP1P25311 298 aaKnown RBP3.13□□□□□ -1.91
USP54-217ENST00000498213 GABRA5P31644 462 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 OTX1P32242 354 aaPredicted RBP3.13□□□□□ -1.91
USP54-217ENST00000498213 CDAP32320 146 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 IFNGR2P38484 337 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 MPV17P39210 176 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 SLC15A1P46059 708 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 HTR5AP47898 357 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 DYNLT3P51808 116 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 UBE2E1P51965 193 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CAV3P56539 151 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 TAS2R41P59536 307 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 SELENOWP63302 87 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 PRKCDQ05655 676 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 DGCR6Q14129 220 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 GK3PQ14409 553 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 TRAM2Q15035 370 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 SGCAQ16586 387 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 MICBQ29980 383 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 TCTEX1D4Q5JR98 221 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 DRAM2Q6UX65 266 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 DLEU7Q6UYE1 221 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 BRD3OSQ6XYD6 125 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 ZNF841Q6ZN19 808 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 DPY19L2P2Q6ZN68 376 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 PQLC2Q6ZP29 291 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CCDC121Q6ZUS5 278 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 OAFQ86UD1 273 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 HAPLN4Q86UW8 402 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CYP4Z1Q86W10 505 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 NDUFA11Q86Y39 141 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CALHM1Q8IU99 346 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 Q8N2B8 174 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 LRRC18Q8N456 261 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 LINC00471Q8N535 108 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 RPP25LQ8N5L8 163 aaKnown RBP3.13□□□□□ -1.91
USP54-217ENST00000498213 ICA1LQ8NDH6 482 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 LY6G5BQ8NDX9 201 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 WFDC9Q8NEX5 89 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 OR52H1Q8NGJ2 320 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 OR4C13Q8NGP0 309 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 OR9I1Q8NGQ6 314 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 OR2T6Q8NHC8 308 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 FGFBP3Q8TAT2 258 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 ITLN1Q8WWA0 313 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 MAL2Q969L2 176 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 SPTSSAQ969W0 71 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 BPIFA2Q96DR5 249 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 TSPAN32Q96QS1 320 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CGREF1Q99674 301 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 PRSS27Q9BQR3 290 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 TMEM246Q9BRR3 403 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 PCGF1Q9BSM1 259 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 MCRIP2Q9BUT9 160 aaKnown RBP3.13□□□□□ -1.91
USP54-217ENST00000498213 BARHL1Q9BZE3 327 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 SIRPDQ9H106 197 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 MEPEQ9NQ76 525 aaPredicted RBP3.13□□□□□ -1.91
USP54-217ENST00000498213 VAPAQ9P0L0 249 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 ZNRD1Q9P1U0 126 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 RIMS3Q9UJD0 308 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 FZR1Q9UM11 496 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CEPT1Q9Y6K0 416 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 CAPN7Q9Y6W3 813 aa3.13□□□□□ -1.91
USP54-217ENST00000498213 TMEM210A6NLX4 147 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 CPSF4LA6NMK7 179 aaKnown RBP3.12□□□□□ -1.91
USP54-217ENST00000498213 TPST1O60507 370 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 E2F6O75461 281 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 DCTN3O75935 186 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 NDUFB2O95178 105 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 CLIC3O95833 236 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 LHBP01229 141 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 IFNW1P05000 195 aa3.12□□□□□ -1.91
USP54-217ENST00000498213 PATE4P0C8F1 98 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms