RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PTPRKQ15262 1439 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 POLR3AO14802 1390 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 IGHV3-64DA0A0J9YX35 117 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 RBFOX3A6NFN3 312 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 FTCDNL1E5RQL4 147 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 REM1O75628 298 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 IGKV5-2P06315 115 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 RPL14P50914 215 aaKnown RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PSMD7P51665 324 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PPIDQ08752 370 aaKnown RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 SMUG1Q53HV7 270 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 MPV17L2Q567V2 206 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 TPGS1Q6ZTW0 290 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 MYPOPQ86VE0 399 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PCP2Q8IVA1 136 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 WDFY1Q8IWB7 410 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 BLOC1S5Q8TDH9 187 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 SMIM8Q96KF7 97 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 RILPQ96NA2 401 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 FAM210AQ96ND0 272 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 APOL4Q9BPW4 351 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 TAPBPLQ9BX59 468 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 SLC19A3Q9BZV2 496 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 FGF23Q9GZV9 251 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 LHX5Q9H2C1 402 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PLEKHJ1Q9NW61 149 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 USE1Q9NZ43 259 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 CEP170BQ9Y4F5 1589 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PZPP20742 1482 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 IQSEC2Q5JU85 1478 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 UHRF1BP1Q6BDS2 1440 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 IGHV5-10-1A0A0J9YXX1 117 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 A0A1B0GUA9 196 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 A0A1W2PRG6 482 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 NKX2-6A6NCS4 301 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 TAAR5O14804 337 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 DEXIO95424 95 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 PSMG1O95456 288 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 MT-ND4P03905 459 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 KRT7P08729 469 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 TAC1P20366 129 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 MAGP20916 626 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 PSMB5P28074 263 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 KIR3DL2P43630 455 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 ACOT2P49753 483 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 ADIGQ0VDE8 80 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF79Q15937 498 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 CLEC19AQ6UXS0 136 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 C11orf53Q8IXP5 236 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 LINC00612Q8N6U2 182 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 C15orf40Q8WUR7 153 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 FAM104AQ969W3 186 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 PPWD1Q96BP3 646 aaKnown RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 CEP170P1Q96L14 293 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 QKIQ96PU8 341 aaKnown RBP eCLIP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 GPR22Q99680 433 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 IFI27L2Q9H2X8 130 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 DHX35Q9H5Z1 703 aaKnown RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 SDHAF3Q9NRP4 125 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 PRO0628Q9UI54 55 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 ABCC3O15438 1527 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 LMTK2Q8IWU2 1503 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 TMEM131Q92545 1883 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 NCOA1Q15788 1441 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 FGD6Q6ZV73 1430 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 ERBINQ96RT1 1412 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 GCC2Q8IWJ2 1684 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 IGLV3-10A0A075B6K4 115 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF35P13682 527 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 COILP38432 576 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 TTPAP49638 278 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 STC1P52823 247 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 MRPS15P82914 257 aaKnown RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 FAM78AQ5JUQ0 283 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 MED27Q6P2C8 311 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 GSG1LQ6UXU4 331 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 CALHM1Q8IU99 346 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 BLIDQ8IZY5 108 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 PGAM4Q8N0Y7 254 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 COQ8AQ8NI60 647 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 FAM45AQ8TCE6 357 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 PHYHIPLQ96FC7 376 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 SMARCD1Q96GM5 515 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 SNF8Q96H20 258 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 OR2A5Q96R48 311 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 GGTLC1Q9BX51 225 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 MRPL20Q9BYC9 149 aaKnown RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 OR52D1Q9H346 318 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 METTL17Q9H7H0 456 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 C12orf10Q9HB07 376 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 OR12D3Q9UGF7 316 aa3.19□□□□□ -1.9
VPS13A-212ENST00000493341 FARSAQ9Y285 508 aaKnown RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 PRG3Q9Y2Y8 225 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-212ENST00000493341 A2ML1A8K2U0 1454 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 ABCC5O15440 1437 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 ARHGAP31Q2M1Z3 1444 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 UNC13BO14795 1591 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 IGLV1-50A0A075B6I6 118 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 C5orf63A6NC05 138 aa3.18□□□□□ -1.9
VPS13A-212ENST00000493341 TLX1NBP0CAT3 122 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms