RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 CD9P21926 228 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 PSMB2P49721 201 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 MLF1P58340 268 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 RPL10AP62906 217 aaKnown RBP1.34□□□□□ -2.19
PTPN4-212ENST00000488896 TRDNQ13061 729 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 TTC32Q5I0X7 151 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 ZNF555Q8NEP9 628 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 OR4K2Q8NGD2 314 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.34□□□□□ -2.19
PTPN4-212ENST00000488896 RNF170Q96K19 258 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 PPP1R36Q96LQ0 422 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 ARMC7Q9H6L4 198 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 ABCB9Q9NP78 766 aa1.34□□□□□ -2.19
PTPN4-212ENST00000488896 KLF13Q9Y2Y9 288 aaPredicted RBP1.34□□□□□ -2.19
PTPN4-212ENST00000488896 AK9Q5TCS8 1911 aa1.34□□□□□ -2.2
PTPN4-212ENST00000488896 CACNA1GO43497 2377 aa1.34□□□□□ -2.2
PTPN4-212ENST00000488896 SBNO1A3KN83 1393 aa1.34□□□□□ -2.2
PTPN4-212ENST00000488896 PLEKHG2Q9H7P9 1386 aa1.34□□□□□ -2.2
PTPN4-212ENST00000488896 LOC100653049A0A140TA62 436 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 H0YIV9 168 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 KRT34O76011 436 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 CDK1P06493 297 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 GZMHP20718 246 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 CSKP41240 450 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 BCAP31P51572 246 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 ST3GAL4Q11206 333 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 ELOCQ15369 112 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 CDNFQ49AH0 187 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 THOC7Q6I9Y2 204 aaKnown RBP1.33□□□□□ -2.2
PTPN4-212ENST00000488896 CLEC18BQ6UXF7 455 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 CLEC19AQ6UXS0 136 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 FAM231DQ6ZW35 169 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 SLC35D2Q76EJ3 337 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 OR5H2Q8NGV7 314 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 MRPL20Q9BYC9 149 aaKnown RBP1.33□□□□□ -2.2
PTPN4-212ENST00000488896 ASB7Q9H672 318 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 DDX18Q9NVP1 670 aaKnown RBP1.33□□□□□ -2.2
PTPN4-212ENST00000488896 DDIT4Q9NX09 232 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 PEF1Q9UBV8 284 aaKnown RBP1.33□□□□□ -2.2
PTPN4-212ENST00000488896 TFR2Q9UP52 801 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 TRAPPC1Q9Y5R8 145 aa1.33□□□□□ -2.2
PTPN4-212ENST00000488896 GOLGA6L7A0A1B0GV03 622 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 A0A1W2PRF3 423 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 A0A1W2PRM7 423 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 ISLRO14498 428 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 CASC3O15234 703 aaKnown RBP1.32□□□□□ -2.2
PTPN4-212ENST00000488896 TRAPPC6AO75865 159 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 OR2A4O95047 310 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 PLEKHA8P1O95397 391 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 TRGV3P03979 118 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 RHOCP08134 193 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 SFTPCP11686 197 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 SRMP19623 302 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 CCT6AP40227 531 aaKnown RBP1.32□□□□□ -2.2
PTPN4-212ENST00000488896 PEX19P40855 299 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 SLC35B1P78383 322 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 DOC2AQ14183 400 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 ASCL4Q6XD76 172 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 CPNE9Q8IYJ1 553 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 FBXO36Q8NEA4 188 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 OR5T3Q8NGG3 340 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 OR2K2Q8NGT1 345 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 OR8S1Q8NH09 359 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 OR51A7Q8NH64 312 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 NDNFQ8TB73 568 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 ZFAND1Q8TCF1 268 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 KIAA1143Q96AT1 154 aaPredicted RBP1.32□□□□□ -2.2
PTPN4-212ENST00000488896 SMIM8Q96KF7 97 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 OR2A7Q96R45 310 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 THTPAQ9BU02 230 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 TMED9Q9BVK6 235 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 IL22Q9GZX6 179 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 RGCCQ9H4X1 137 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 CHRAC1Q9NRG0 131 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 PRO0628Q9UI54 55 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 KPTNQ9Y664 436 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 NEURL4Q96JN8 1562 aa1.32□□□□□ -2.2
PTPN4-212ENST00000488896 A0A0B4J2C4 111 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 TRGV4A0A0C4DH28 118 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 FAM240AA0A1B0GVK7 77 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 C9JQL5 133 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 SNRPAP09012 282 aaKnown RBP1.31□□□□□ -2.2
PTPN4-212ENST00000488896 OR5AL1P0C617 328 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 IVDP26440 423 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 RPL31P62899 125 aaKnown RBP1.31□□□□□ -2.2
PTPN4-212ENST00000488896 ENDOGQ14249 297 aaKnown RBP1.31□□□□□ -2.2
PTPN4-212ENST00000488896 TMEM241Q24JQ0 296 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 FAM27D1Q5T7N8 215 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 LINC00523Q86TU6 105 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 SETD3Q86TU7 594 aaPredicted RBP1.31□□□□□ -2.2
PTPN4-212ENST00000488896 LYPD6Q86Y78 171 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 TMEM25Q86YD3 366 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 CYP4Z2PQ8N1L4 340 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 CCNYL1Q8N7R7 359 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 OR6K6Q8NGW6 343 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 NT5CQ8TCD5 201 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 CHID1Q9BWS9 393 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 KIR3DX1Q9H7L2 352 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 C6orf50Q9HD87 102 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 PSME2Q9UL46 239 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms