RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 COPS3Q9UNS2 423 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 LINC00312Q9Y6C7 94 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 HYDINQ4G0P3 5121 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 IGKV1-27A0A075B6S5 117 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 A0A1B0GTI1 187 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 PRODHO43272 600 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 IGLV1-47P01700 117 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 IGHA1P01876 353 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 H2AFXP16104 143 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-228ENST00000487354 HTR1DP28221 377 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 DGCR2P98153 550 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 IL24Q13007 206 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 EDDM3AQ14507 147 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 CLVS2Q5SYC1 327 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 UTF1Q5T230 341 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 CASC10Q5T4H9 136 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 ASRGL1Q7L266 308 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 GDPD3Q7L5L3 318 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 OR2W3Q7Z3T1 314 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 ZNF329Q86UD4 541 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 COMMD2Q86X83 199 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 TEX47Q8TBZ9 253 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 TFAP2CQ92754 450 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 PKIBQ9C010 78 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 V9GYS6 101 aa12.15□□□□□ -0.46
MCF2L-228ENST00000487354 A6NIN4 97 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 PRR23D1E9PI22 279 aaPredicted RBP12.14□□□□□ -0.47
MCF2L-228ENST00000487354 DLGAP1O14490 977 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 PSPNO60542 156 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 DNAJC8O75937 253 aaPredicted RBP12.14□□□□□ -0.47
MCF2L-228ENST00000487354 PRR23D2P0DMB1 279 aaPredicted RBP12.14□□□□□ -0.47
MCF2L-228ENST00000487354 GDNFP39905 211 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 BDH1Q02338 343 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 ROM1Q03395 351 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 IL18R1Q13478 541 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 LCN1P1Q5VSP4 162 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 DEGS2Q6QHC5 323 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 CYP2R1Q6VVX0 501 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 CPOQ8IVL8 374 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 PGAM4Q8N0Y7 254 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 OR10G2Q8NGC3 310 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 OR14K1Q8NGZ2 314 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 AKR1E2Q96JD6 320 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 SNX22Q96L94 193 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 CDRT15Q96T59 188 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 MCRIP2Q9BUT9 160 aaKnown RBP12.14□□□□□ -0.47
MCF2L-228ENST00000487354 TTTY10Q9BZA0 68 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 LAMP5Q9UJQ1 280 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 SAMHD1Q9Y3Z3 626 aaKnown RBP12.14□□□□□ -0.47
MCF2L-228ENST00000487354 PCDHGB5Q9Y5G0 923 aa12.14□□□□□ -0.47
MCF2L-228ENST00000487354 hADV38S2A0JD32 116 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 PSMB11A5LHX3 300 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 CCDC182A6NF36 153 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 LY6LH3BQJ8 138 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 GSC2O15499 205 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 LMO1P25800 156 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 LUMP51884 338 aaPredicted RBP12.13□□□□□ -0.47
MCF2L-228ENST00000487354 PRAMEF5Q5TYX0 476 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 OR2T5Q6IEZ7 315 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 EGFL6Q8IUX8 553 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 OR51D1Q8NGF3 324 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 OR2T29Q8NH02 315 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 NOL4LQ96MY1 436 aaPredicted RBP12.13□□□□□ -0.47
MCF2L-228ENST00000487354 DUX3Q96PT4 197 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 PRR25Q96S07 402 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 FEVQ99581 238 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 CADM1Q9BY67 442 aaKnown RBP12.13□□□□□ -0.47
MCF2L-228ENST00000487354 CHST6Q9GZX3 395 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 DPM3Q9P2X0 92 aa12.13□□□□□ -0.47
MCF2L-228ENST00000487354 FAM172BPA6NC97 362 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 H3BN98 237 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 SNRNP70P08621 437 aaKnown RBP12.12□□□□□ -0.47
MCF2L-228ENST00000487354 MYCNOSP40205 109 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 GINS1Q14691 196 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 SLC35D3Q5M8T2 416 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 ZBTB49Q6ZSB9 765 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 ZNF679Q8IYX0 411 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 ABHD12Q8N2K0 398 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 TRMT10AQ8TBZ6 339 aaKnown RBP12.12□□□□□ -0.47
MCF2L-228ENST00000487354 CEP19Q96LK0 163 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 ASCL2Q99929 193 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 YIPF3Q9GZM5 350 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 ZNF286AQ9HBT8 521 aa12.12□□□□□ -0.47
MCF2L-228ENST00000487354 MRPL3P09001 348 aaKnown RBP12.11□□□□□ -0.47
MCF2L-228ENST00000487354 CD34P28906 385 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 BRS3P32247 399 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 OR3A1P47881 315 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 OR3A4PP47883 348 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 ZNF91Q05481 1191 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 GRK1Q15835 563 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 C9orf152Q5JTZ5 239 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 KCTD18Q6PI47 426 aaPredicted RBP12.11□□□□□ -0.47
MCF2L-228ENST00000487354 TMEM179BQ7Z7N9 219 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 MUC7Q8TAX7 377 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 SLAMF9Q96A28 289 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 RAX2Q96IS3 184 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 MROQ9BYG7 248 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 MAGIXQ9H6Y5 334 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 REEP1Q9H902 201 aa12.11□□□□□ -0.47
MCF2L-228ENST00000487354 SEBOXQ9HB31 216 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms