RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SIGIRRQ6IA17 410 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 ELP2Q6IA86 826 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 AKAP14Q86UN6 197 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 OR4D10Q8NGI6 311 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 OR56B4Q8NH76 319 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 C20orf85Q9H1P6 137 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 PLCE1Q9P212 2302 aa12.1□□□□□ -0.47
CUX1-209ENST00000487284 HMX3A6NHT5 357 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 BOLA2-SMG1P6H3BVE0 249 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 RAB3DO95716 219 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 NAT1P18440 290 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 KITLGP21583 273 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 MPZP25189 248 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 CD40P25942 277 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 CBX5P45973 191 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 HAAOP46952 286 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 RBM11P57052 281 aaKnown RBP12.09□□□□□ -0.47
CUX1-209ENST00000487284 MKXQ8IYA7 352 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 FBXL14Q8N1E6 418 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 OCSTAMPQ9BR26 566 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 IFT46Q9NQC8 304 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 HSF4Q9ULV5 492 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 DPRXA6NFQ7 191 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 PEX14O75381 377 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 CRYAAP02489 173 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 FCER2P06734 321 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 TBPP20226 339 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 GABRR1P24046 479 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 CHATP28329 748 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 RAB25P57735 213 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 BSPH1Q075Z2 132 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 RBMS2Q15434 407 aaKnown RBP12.09□□□□□ -0.47
CUX1-209ENST00000487284 TAF9Q16594 264 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 ALKBH6Q3KRA9 238 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 NHLRC3Q5JS37 347 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 TMEM108Q6UXF1 575 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 ZNF782Q6ZMW2 699 aaPredicted RBP12.09□□□□□ -0.47
CUX1-209ENST00000487284 ZNF573Q86YE8 665 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 GVQW1Q8N7I0 195 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 OR8S1Q8NH09 359 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 HPS1Q92902 700 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 CYYR1Q96J86 154 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 MICU1Q9BPX6 476 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 RTL8AQ9BWD3 113 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 PKIBQ9C010 78 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 NGBQ9NPG2 151 aa12.09□□□□□ -0.47
CUX1-209ENST00000487284 PURGQ9UJV8 347 aaKnown RBP12.09□□□□□ -0.47
CUX1-209ENST00000487284 CHD3Q12873 2000 aaKnown RBP12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A10PA6NDY2 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A18PA6NE21 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A16PA6NEW6 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A20PA6NIJ5 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A8PA6NJQ4 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A7PA6NKC0 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A22PA8MWA6 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A12PA8MX19 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A5PA8MXJ8 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A23PA8MXZ1 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 ATP6V1G2-DDX39BF2Z307 99 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A15PP0C7V4 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A13PP0C7W8 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A14PP0C7W9 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 FAM90A24PP0C7X0 464 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 ZNF735P0CB33 412 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 BCL3P20749 454 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 PTAFRP25105 342 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 NPBWR2P48146 333 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 MECP2P51608 486 aaKnown RBP12.08□□□□□ -0.48
CUX1-209ENST00000487284 FGF12P61328 243 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 IL24Q13007 206 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 ARFRP1Q13795 201 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 MEF2DQ14814 521 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 DAZAP2Q15038 168 aaPredicted RBP12.08□□□□□ -0.48
CUX1-209ENST00000487284 PIGYQ3MUY2 71 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 ZNF718Q3SXZ3 478 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 MBNL2Q5VZF2 373 aaKnown RBP12.08□□□□□ -0.48
CUX1-209ENST00000487284 C6orf201Q7Z4U5 140 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 OR4S1Q8NGB4 309 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 OR51S1Q8NGJ8 323 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 SLAMF9Q96A28 289 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 ADAT1Q9BUB4 502 aaKnown RBP12.08□□□□□ -0.48
CUX1-209ENST00000487284 TINAGL1Q9GZM7 467 aaPredicted RBP12.08□□□□□ -0.48
CUX1-209ENST00000487284 OR51I2Q9H344 312 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 GHITMQ9H3K2 345 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 ST3GAL6Q9Y274 331 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 ROS1P08922 2347 aa12.08□□□□□ -0.48
CUX1-209ENST00000487284 A0A0A6YYJ9 748 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.07□□□□□ -0.48
CUX1-209ENST00000487284 LRP5LA4QPB2 252 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 CLEC18AA5D8T8 446 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 J3QT63 122 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 M0QYG6 137 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 ABCD4O14678 606 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 GEMIN2O14893 280 aaKnown RBP12.07□□□□□ -0.48
CUX1-209ENST00000487284 SIAH2O43255 324 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 SYNGR1O43759 233 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 AMY2AP04746 511 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 IGFBP2P18065 325 aa12.07□□□□□ -0.48
CUX1-209ENST00000487284 RNASE10Q5GAN6 216 aaKnown RBP12.07□□□□□ -0.48
CUX1-209ENST00000487284 FAM76BQ5HYJ3 339 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms