RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RNF167Q9H6Y7 350 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 MIEF1Q9NQG6 463 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 MIOXQ9UGB7 285 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 OPN4Q9UHM6 478 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 CRLS1Q9UJA2 301 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ZNF225Q9UK10 706 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 SCML2Q9UQR0 700 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 RASD1Q9Y272 281 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 Q9Y3F1 56 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 ZFC3H1O60293 1989 aaKnown RBP4.25□□□□□ -1.73
USP40-213ENST00000483216 CASP8AP2Q9UKL3 1982 aa4.25□□□□□ -1.73
USP40-213ENST00000483216 A0A1B0GWJ7 208 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 ANKRD20A5PA0PJZ0 165 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 SEC14L6B5MCN3 397 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 WWP2O00308 870 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 ZNF593O00488 134 aaPredicted RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 HCRTO43612 131 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 KDELR3O43731 214 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 NIPSNAP2O75323 286 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 DUSP14O95147 198 aaKnown RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 SLC25A14O95258 325 aaPredicted RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 CXCL14O95715 111 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 AIFM1O95831 613 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 CD8AP01732 235 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 WNT2P09544 360 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 AKAIN1P0CW23 69 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 ALPPL2P10696 532 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 HLA-GP17693 338 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 TBPP20226 339 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 PRDX3P30048 256 aaKnown RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 CSNK1DP48730 415 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 CX3CR1P49238 355 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 PRKXP51817 358 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 RPS25P62851 125 aaKnown RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 UBE2IP63279 158 aaKnown RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 ARF5P84085 180 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 HMGCS1Q01581 520 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 SLC10A7Q0GE19 358 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 PPP1R8Q12972 351 aaKnown RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 EIF4EBP2Q13542 120 aaPredicted RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 C2orf76Q3KRA6 126 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 SLC36A2Q495M3 483 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 TMEM69Q5SWH9 247 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 ZNF660Q6AZW8 331 aaPredicted RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 KRTAP5-1Q6L8H4 278 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 ALKAL2Q6UX46 152 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 RANBP3LQ86VV4 465 aaPredicted RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 PAQR7Q86WK9 346 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 KRTCAP2Q8N6L1 136 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 Q8N7P7 452 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 MFSD9Q8NBP5 474 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 BPIFCQ8NFQ6 507 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 C2orf15Q8WU43 125 aaKnown RBP4.24□□□□□ -1.73
USP40-213ENST00000483216 SLC5A11Q8WWX8 675 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 TMEM37Q8WXS4 190 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 MAFIPQ8WZ33 124 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 SMARCD2Q92925 531 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 NEURL3Q96EH8 262 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 ZFP3Q96NJ6 502 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 PHB2Q99623 299 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 PRRT1Q99946 306 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 PCBD2Q9H0N5 130 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 METTL9Q9H1A3 318 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 OR52A5Q9H2C5 316 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 IKZF5Q9H5V7 419 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 BCL2L10Q9HD36 194 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 STARD5Q9NSY2 213 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 DNAJC27Q9NZQ0 273 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 NTNG1Q9Y2I2 539 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 NEUROG3Q9Y4Z2 214 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 ARL5AQ9Y689 179 aa4.24□□□□□ -1.73
USP40-213ENST00000483216 SCN10AQ9Y5Y9 1956 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TMEM72A0PK05 275 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TVP23AA6NH52 213 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 RIIAD1A6NNX1 92 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 A8MUA0 341 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 B4DEV8 164 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 SLC31A2O15432 143 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 MAGEB4O15481 346 aaPredicted RBP4.23□□□□□ -1.73
USP40-213ENST00000483216 NUDT21O43809 227 aaKnown RBP4.23□□□□□ -1.73
USP40-213ENST00000483216 OR2T1O43869 369 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 FADS1O60427 444 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 EIF3GO75821 320 aaKnown RBP eCLIP4.23□□□□□ -1.73
USP40-213ENST00000483216 TOXO94900 526 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 DIRAS1O95057 198 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 AK1P00568 194 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 RPN2P04844 631 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 SLC35E2P0CK97 266 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 POU2F1P14859 743 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 CXCL3P19876 107 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 HOXA6P31267 233 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 CSKP41240 450 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 RGRP47804 291 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 CAV2P51636 162 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 CCR8P51685 355 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 TAS2R41P59536 307 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 SKP1P63208 163 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 MRPS6P82932 125 aaKnown RBP4.23□□□□□ -1.73
USP40-213ENST00000483216 BEX3Q00994 111 aa4.23□□□□□ -1.73
USP40-213ENST00000483216 BCL2L1Q07817 233 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms