RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 HSPB2Q16082 182 aa11.95□□□□□ -0.5
USP42-206ENST00000479544 THEM4Q5T1C6 240 aa11.95□□□□□ -0.5
USP42-206ENST00000479544 ZNF100Q8IYN0 542 aa11.95□□□□□ -0.5
USP42-206ENST00000479544 C8orf33Q9H7E9 229 aaPredicted RBP11.95□□□□□ -0.5
USP42-206ENST00000479544 IL17BQ9UHF5 180 aa11.95□□□□□ -0.5
USP42-206ENST00000479544 PTRH2Q9Y3E5 179 aaKnown RBP11.95□□□□□ -0.5
USP42-206ENST00000479544 SERPINE3A8MV23 424 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 B4GALT1P15291 398 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 P2RY4P51582 365 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 ZNF260Q3ZCT1 412 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 Q3ZCU0 254 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 PTCRAQ6ISU1 281 aaPredicted RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 ZNF813Q6ZN06 617 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 OR11L1Q8NGX0 322 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 TMEM18Q96B42 140 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 C5orf66Q9H5L9 145 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 TLCD2A6NGC4 264 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 PLRG1O43660 514 aaKnown RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 ZNF25P17030 456 aaPredicted RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 MST1P26927 711 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 GRB2P62993 217 aaKnown RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 UBE2V2Q15819 145 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 PLA2G2FQ9BZM2 168 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 UBE2ZQ9H832 354 aaPredicted RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 LMAN1LQ9HAT1 526 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 ENY2Q9NPA8 101 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 KCNIP1Q9NZI2 227 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 LOC285556D6RIA3 1793 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 A0A096LPE4 126 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 A0A1W2PPZ6 126 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 H0Y8G0 127 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 TNFRSF10CO14798 259 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 NRASP01111 189 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 IL2RGP31785 369 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 GABRA4P48169 554 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 NOVA1P51513 510 aaKnown RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 SSTP61278 116 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 GAMTQ14353 236 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 TRIM61Q5EBN2 209 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 TOMM20LQ6UXN7 152 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 SLC26A1Q9H2B4 701 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 OR5H1A6NKK0 313 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 ABHD16AO95870 558 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 CD74P04233 296 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 P04436 131 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 ACKR3P25106 362 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 APOBEC1P41238 236 aaKnown RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 SULT1A2P50226 295 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 HLA-DRB3P79483 266 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 ZNF154Q13106 437 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 FAHD2BQ6P2I3 314 aaPredicted RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 DBX2Q6ZNG2 339 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 YRDCQ86U90 279 aaKnown RBP11.94□□□□□ -0.5
USP42-206ENST00000479544 FAHD2AQ96GK7 314 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 OR6C1Q96RD1 312 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 PILRAQ9UKJ1 303 aa11.94□□□□□ -0.5
USP42-206ENST00000479544 ATP6V0CP27449 155 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 ZNF385CQ66K41 422 aaPredicted RBP11.93□□□□□ -0.5
USP42-206ENST00000479544 OR13G1Q8NGZ3 307 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 ERGIC1Q969X5 290 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 CCNL2Q96S94 520 aaPredicted RBP11.93□□□□□ -0.5
USP42-206ENST00000479544 SARGQ9BW04 601 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 UCK1Q9HA47 277 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 PARP11Q9NR21 331 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 YBX2Q9Y2T7 364 aaKnown RBP11.93□□□□□ -0.5
USP42-206ENST00000479544 TGIF2-C20orf24A0A0A6YYL0 155 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 MASP2O00187 686 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 TTRP02766 147 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 MRPS21P82921 87 aaKnown RBP11.93□□□□□ -0.5
USP42-206ENST00000479544 WDR25Q64LD2 544 aaPredicted RBP11.93□□□□□ -0.5
USP42-206ENST00000479544 OR4A4PQ8NGN8 299 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 OBP2AQ9NY56 170 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 SRPK3Q9UPE1 567 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 MMACHCQ9Y4U1 282 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 FTCDNL1E5RQL4 147 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 LINC01387J3KSC0 135 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 HOXC12P31275 282 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 SRPXP78539 464 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 ZNF439Q8NDP4 499 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 MCHR2Q969V1 340 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 SOX7Q9BT81 388 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 PLEKHF2Q9H8W4 249 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 TMEM100Q9NV29 134 aa11.93□□□□□ -0.5
USP42-206ENST00000479544 IGKV1D-42A0A075B6H8 117 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 TRBV5-7A0A0A0MS05 114 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 MDFIC2A0A1B0GVS7 189 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 SCRG1O75711 98 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 GPR3P46089 330 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 DYNLT3P51808 116 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 NAAAQ02083 359 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 ECH1Q13011 328 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 PNLIPRP3Q17RR3 467 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 PLAC9Q5JTB6 97 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 BTF3L4Q96K17 158 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 ADAM19Q9H013 955 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 NAA60Q9H7X0 242 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 MCTS1Q9ULC4 181 aaKnown RBP11.92□□□□□ -0.5
USP42-206ENST00000479544 GPR132Q9UNW8 380 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 ABCA7Q8IZY2 2146 aa11.92□□□□□ -0.5
USP42-206ENST00000479544 UBE2L5PA0A1B0GUS4 154 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms