RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 ZFP57Q9NU63 452 aa13.63□□□□□ -0.23
VIM-204ENST00000478746 TAS2R1Q9NYW7 299 aa13.63□□□□□ -0.23
VIM-204ENST00000478746 TAGLN3Q9UI15 199 aa13.63□□□□□ -0.23
VIM-204ENST00000478746 SLC6A1P30531 599 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 ERVK11-1P61568 191 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 EDDM3AQ14507 147 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 C18orf65Q6ZTR6 163 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 TCF23Q7RTU1 214 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 OR8H2Q8N162 312 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 SNX22Q96L94 193 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 PRR25Q96S07 402 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 P2RX4Q99571 388 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 PAPOLBQ9NRJ5 636 aaKnown RBP13.62□□□□□ -0.23
VIM-204ENST00000478746 ARL8BQ9NVJ2 186 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 KLHDC2Q9Y2U9 406 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 LINC00312Q9Y6C7 94 aa13.62□□□□□ -0.23
VIM-204ENST00000478746 PQLC2LA1A4F0 135 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 M0QZK8 103 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 PSMD9O00233 223 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 MNAT1P51948 309 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 GP2P55259 537 aaKnown RBP13.61□□□□□ -0.23
VIM-204ENST00000478746 PPP1R8Q12972 351 aaKnown RBP13.61□□□□□ -0.23
VIM-204ENST00000478746 CLVS2Q5SYC1 327 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 PLBD1Q6P4A8 553 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 ANGPTL5Q86XS5 388 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 ABHD12Q8N2K0 398 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 NSL1Q96IY1 281 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 TEAD3Q99594 435 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 PBOV1Q9GZY1 135 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 GPR173Q9NS66 373 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 FAM206AQ9NX38 181 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 LAMP5Q9UJQ1 280 aa13.61□□□□□ -0.23
VIM-204ENST00000478746 PRR23D1E9PI22 279 aaPredicted RBP13.6□□□□□ -0.23
VIM-204ENST00000478746 PRR23D2P0DMB1 279 aaPredicted RBP13.6□□□□□ -0.23
VIM-204ENST00000478746 ALOX5APP20292 161 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 MPZP25189 248 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 RAB25P57735 213 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 BDH1Q02338 343 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 TPRX1Q8N7U7 411 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 KLHL30-AS1Q8NEE0 82 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 Q8NFD4 153 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 ZNF596Q8TC21 504 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 CDRT15Q96T59 188 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 DGCR6LQ9BY27 220 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 GAR1Q9NY12 217 aaKnown RBP13.6□□□□□ -0.23
VIM-204ENST00000478746 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.6□□□□□ -0.23
VIM-204ENST00000478746 HHLA2Q9UM44 414 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 DNAH7Q8WXX0 4024 aa13.6□□□□□ -0.23
VIM-204ENST00000478746 HUWE1Q7Z6Z7 4374 aaKnown RBP13.6□□□□□ -0.23
VIM-204ENST00000478746 TMEM82A0PJX8 343 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 LEUTXA8MZ59 168 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 DLGAP1O14490 977 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 MMP23AO75900 390 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 DHRS3O75911 302 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 IGLV3-1P01715 115 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 OR3A4PP47883 348 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 HCCSP53701 268 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 ESRRGP62508 458 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 IL24Q13007 206 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 SNAPC1Q16533 368 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 DEGS2Q6QHC5 323 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 RTN4RL2Q86UN3 420 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 PGAM4Q8N0Y7 254 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 IQCF1Q8N6M8 205 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 TEX47Q8TBZ9 253 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 CHPT1Q8WUD6 406 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 DUX3Q96PT4 197 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 PKIBQ9C010 78 aa13.59□□□□□ -0.23
VIM-204ENST00000478746 LCE6AA0A183 80 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 SNRNP70P08621 437 aaKnown RBP13.58□□□□□ -0.24
VIM-204ENST00000478746 LYL1P12980 280 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 CALB2P22676 271 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 PEX2P28328 305 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 CHATP28329 748 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 ECI1P42126 302 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 GRK1Q15835 563 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 MICAQ29983 383 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 TMEM42Q69YG0 159 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 OR52W1Q6IF63 320 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 TRAPPC6BQ86SZ2 158 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 ZNF695Q8IW36 515 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 NOL4LQ96MY1 436 aaPredicted RBP13.58□□□□□ -0.24
VIM-204ENST00000478746 MROQ9BYG7 248 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 DNAJB9Q9UBS3 223 aa13.58□□□□□ -0.24
VIM-204ENST00000478746 ARRDC5A6NEK1 342 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 F8VVB4 439 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 F8VWA3 439 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 H3BN98 237 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 CCL24O00175 119 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 GABRR1P24046 479 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 CEACAM3P40198 252 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 MAGEA2P43356 314 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 LUMP51884 338 aaPredicted RBP13.57□□□□□ -0.24
VIM-204ENST00000478746 C9orf66Q5T8R8 295 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 SLX4IPQ5VYV7 408 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 BAIAP2L2Q6UXY1 529 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 CYP2R1Q6VVX0 501 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 OR52N4Q8NGI2 321 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 CEP19Q96LK0 163 aa13.57□□□□□ -0.24
VIM-204ENST00000478746 CHST6Q9GZX3 395 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms