RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 LINC00854A0A1B0GVQ3 168 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 FAM240BA0A1B0GVZ2 78 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TMEM235A6NFC5 223 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 NOS1APO75052 506 aaPredicted RBP10.91□□□□□ -0.66
VPS13D-205ENST00000473099 PTBP3O95758 552 aaKnown RBP10.91□□□□□ -0.66
VPS13D-205ENST00000473099 SFTPBP07988 381 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TBPP20226 339 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 BCL3P20749 454 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TNFSF4P23510 183 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TMEM50BP56557 158 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TAS2R19P59542 299 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TFF3Q07654 80 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 ZNF154Q13106 437 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TMEM255AQ5JRV8 349 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 OLFML2AQ68BL7 652 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 VHLLQ6RSH7 139 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 GDPD3Q7L5L3 318 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 FBXL14Q8N1E6 418 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TMEM229BQ8NBD8 167 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 SCCPDHQ8NBX0 429 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 DUSP18Q8NEJ0 188 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 SLAMF9Q96A28 289 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 PLPPR2Q96GM1 343 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 ARHGAP5-AS1Q96IT6 56 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 PECRQ9BY49 303 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 SPACA1Q9HBV2 294 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 PLEKHJ1Q9NW61 149 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 MTCH1Q9NZJ7 389 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 TAAR3PQ9P1P4 343 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 KLK11Q9UBX7 282 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 FZR1Q9UM11 496 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 PLEKHA6Q9Y2H5 1048 aa10.91□□□□□ -0.66
VPS13D-205ENST00000473099 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.9□□□□□ -0.66
VPS13D-205ENST00000473099 MEIOCA2RUB1 952 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 SYNGR1O43759 233 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 PDCD6O75340 191 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 GLAP06280 429 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 AKAIN1P0CW23 69 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 PGA5P0DJD9 388 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 GNB3P16520 340 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 FUT3P21217 361 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 GABRR1P24046 479 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 NPBWR2P48146 333 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 SRP9P49458 86 aaKnown RBP10.9□□□□□ -0.66
VPS13D-205ENST00000473099 MRPS15P82914 257 aaKnown RBP10.9□□□□□ -0.66
VPS13D-205ENST00000473099 ARFRP1Q13795 201 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 TAF9Q16594 264 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 NKPD1Q17RQ9 610 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 PCGF3Q3KNV8 242 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 PLAC9Q5JTB6 97 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 CCBE1Q6UXH8 406 aaPredicted RBP10.9□□□□□ -0.66
VPS13D-205ENST00000473099 Q6ZR03 302 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 NRARPQ7Z6K4 114 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 WDR86Q86TI4 376 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 FAM58AQ8N1B3 248 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 OR10AD1Q8NGE0 317 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 OR10Z1Q8NGY1 313 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 ITLN2Q8WWU7 325 aaPredicted RBP10.9□□□□□ -0.66
VPS13D-205ENST00000473099 ST8SIA4Q92187 359 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 GCDHQ92947 438 aaPredicted RBP10.9□□□□□ -0.66
VPS13D-205ENST00000473099 SYT3Q9BQG1 590 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 MRPL37Q9BZE1 423 aaKnown RBP10.9□□□□□ -0.66
VPS13D-205ENST00000473099 OCEL1Q9H607 264 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 MSL2Q9HCI7 577 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 IFT46Q9NQC8 304 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 RNF115Q9Y4L5 304 aa10.9□□□□□ -0.66
VPS13D-205ENST00000473099 ROS1P08922 2347 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 SHISA9B4DS77 424 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 F5H5P2 479 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 H0YL77 283 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 PYCARD-AS1I3L0S3 204 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 GEMIN2O14893 280 aaKnown RBP10.89□□□□□ -0.67
VPS13D-205ENST00000473099 GRPP07492 148 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 ADH4P08319 380 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 PTHLHP12272 177 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 PRKACAP17612 351 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 CHATP28329 748 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 SLC6A1P30531 599 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 UQCRFS1P47985 274 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 RFX2P48378 723 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 ZNF81P51508 661 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 ERVK11-1P61568 191 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 GUCA2AQ02747 115 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 IGFBP7Q16270 282 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 MSMPQ1L6U9 139 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 ACTBL2Q562R1 376 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 SPIN3Q5JUX0 258 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 ADAM5Q6NVV9 412 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 PLET1Q6UQ28 207 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 TRAPPC6BQ86SZ2 158 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 LRP11Q86VZ4 500 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 POC1AQ8NBT0 407 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 OR2Z1Q8NG97 314 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 LINC01560Q8TB33 94 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 EMG1Q92979 244 aaKnown RBP10.89□□□□□ -0.67
VPS13D-205ENST00000473099 ERGIC1Q969X5 290 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 ELMOD3Q96FG2 381 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 OCSTAMPQ9BR26 566 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 CHST6Q9GZX3 395 aa10.89□□□□□ -0.67
VPS13D-205ENST00000473099 DPAGT1Q9H3H5 408 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms