RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SAXO1Q8IYX7 474 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 ZSCAN4Q8NAM6 433 aaPredicted RBP12.35□□□□□ -0.43
COL9A3-209ENST00000469852 PXT1Q8NFP0 134 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 KCTD7Q96MP8 289 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 GAL3ST1Q99999 423 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 NLKQ9UBE8 527 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 CTSZQ9UBR2 303 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 DNAJB11Q9UBS4 358 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 ING4Q9UNL4 249 aa12.35□□□□□ -0.43
COL9A3-209ENST00000469852 MRPS28Q9Y2Q9 187 aaKnown RBP12.35□□□□□ -0.43
COL9A3-209ENST00000469852 GABARAPO95166 117 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 FSTL3O95633 263 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 IGHV2-5P01817 119 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 PSG2P11465 335 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 SELLP14151 372 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 USF1P22415 310 aaPredicted RBP12.34□□□□□ -0.43
COL9A3-209ENST00000469852 MTNR1BP49286 362 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 VBP1P61758 197 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 MXD1Q05195 221 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 CTF1Q16619 201 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 TIMM50Q3ZCQ8 353 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 TMEM155Q4W5P6 130 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 GLT8D1Q68CQ7 371 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 GLIPR1L1Q6UWM5 242 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 GDPGP1Q6ZNW5 385 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 ANKRD13BQ86YJ7 626 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 FGFRL1Q8N441 504 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 ANGPTL6Q8NI99 470 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 EMG1Q92979 244 aaKnown RBP12.34□□□□□ -0.43
COL9A3-209ENST00000469852 SLC25A28Q96A46 364 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 CPNE2Q96FN4 548 aaPredicted RBP12.34□□□□□ -0.43
COL9A3-209ENST00000469852 CCL13Q99616 98 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 UQCC2Q9BRT2 126 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 ELL3Q9HB65 397 aaPredicted RBP12.34□□□□□ -0.43
COL9A3-209ENST00000469852 METRNQ9UJH8 293 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 ZNF222Q9UK12 451 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 GSTK1Q9Y2Q3 226 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 ACANP16112 2415 aa12.34□□□□□ -0.43
COL9A3-209ENST00000469852 TRAV38-1A0A0B4J264 116 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 OR2AT4A6NND4 320 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 F5H0A9 414 aaPredicted RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 SMAD7O15105 426 aaKnown RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 SLC22A1O15245 554 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 CYB5AP00167 134 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 MUC1P15941 1255 aaPredicted RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 PRKACAP17612 351 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 RAB3BP20337 219 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 DUSP1P28562 367 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 CLDN12P56749 244 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 LOXL1Q08397 574 aaPredicted RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 P2RY14Q15391 338 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 MICBQ29980 383 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 HES5Q5TA89 166 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 AWAT2Q6E213 333 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 METAP1DQ6UB28 335 aaPredicted RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 CLVS1Q8IUQ0 354 aaPredicted RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 FAM58AQ8N1B3 248 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 MUC20Q8N307 709 aaPredicted RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 CD177Q8N6Q3 437 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 FAM216BQ8N7L0 139 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 PNLDC1Q8NA58 520 aaKnown RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 POM121Q96HA1 1249 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 GAFA1Q96PS6 74 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 ZNF665Q9H7R5 613 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 PATZ1Q9HBE1 687 aaKnown RBP12.33□□□□□ -0.44
COL9A3-209ENST00000469852 HMG20AQ9NP66 347 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 RASL12Q9NYN1 266 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 ZNF581Q9P0T4 197 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 OR14J1Q9UGF5 321 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 V9GY05 133 aa12.33□□□□□ -0.44
COL9A3-209ENST00000469852 A0A0B4J203 849 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 RFPL4AA6NLU0 287 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 FAM157AC9JC47 383 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 RFPL4AL1F8VTS6 287 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 SLC17A2O00624 439 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 PDCD5O14737 125 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 HTR3BO95264 441 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 WNT2P09544 360 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 SLC2A2P11168 524 aaPredicted RBP12.32□□□□□ -0.44
COL9A3-209ENST00000469852 SERPINA2P20848 420 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 HTR2CP28335 458 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 PDCD1Q15116 288 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 RSU1Q15404 277 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 SMIM21Q3B7S5 101 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 PIGYQ3MUY2 71 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 SLC22A6Q4U2R8 563 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 OR10K2Q6IF99 312 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 DCDC5Q6ZRR9 648 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 SPICQ8N5J4 248 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 TMEM104Q8NE00 496 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 Q8NFD4 153 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 TBC1D15Q8TC07 691 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 C12orf43Q96C57 262 aaKnown RBP12.32□□□□□ -0.44
COL9A3-209ENST00000469852 FOXRED1Q96CU9 486 aaPredicted RBP12.32□□□□□ -0.44
COL9A3-209ENST00000469852 CYYR1Q96J86 154 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 COX4I2Q96KJ9 171 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 TMUB1Q9BVT8 246 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 METTL9Q9H1A3 318 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 PLGRKTQ9HBL7 147 aa12.32□□□□□ -0.44
COL9A3-209ENST00000469852 IL36GQ9NZH8 169 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms