RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TMED6Q8WW62 240 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 TOMM40LQ969M1 308 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 CPNE2Q96FN4 548 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 MARS2Q96GW9 593 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 DDA1Q9BW61 102 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 RGCCQ9H4X1 137 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF703Q9H7S9 590 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ASF1BQ9NVP2 202 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ST3GAL6Q9Y274 331 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 FARS2O95363 451 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 CTSDP07339 412 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 MAGEA5P43359 124 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ARF1P84077 181 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 AIMP2Q13155 320 aaKnown RBP7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ABHD17BQ5VST6 288 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF585AQ6P3V2 769 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 TFAP2EQ6VUC0 442 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 SGPP2Q8IWX5 399 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF100Q8IYN0 542 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 SLC30A7Q8NEW0 376 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 FAM173AQ9BQD7 235 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 SLC6A15Q9H2J7 730 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 CALHM2Q9HA72 323 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 OR2S2Q9NQN1 319 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 DECR2Q9NUI1 292 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF391Q9UJN7 358 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 EDARQ9UNE0 448 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 SLC7A11Q9UPY5 501 aa7.74□□□□□ -1.17
SYNE1-217ENST00000466159 FAM186AA6NE01 2351 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF816-ZNF321PA0A0X1KG74 233 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 CRYM-AS1A6NIL9 109 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF883P0CG24 379 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 NPBWR2P48146 333 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 AKR1C2P52895 323 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 CLDN18P56856 261 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 PIGPP57054 158 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 AKR1C1Q04828 323 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 IAH1Q2TAA2 248 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-217ENST00000466159 SP6Q3SY56 376 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 PLEKHN1Q494U1 663 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-217ENST00000466159 PDSS1Q5T2R2 415 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 LINC00696Q6ZRV3 163 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 MARC2Q969Z3 335 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 TMEM45BQ96B21 275 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 NARS2Q96I59 477 aaKnown RBP7.73□□□□□ -1.17
SYNE1-217ENST00000466159 AQP10Q96PS8 301 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 C1QTNF5Q9BXJ0 243 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 BCO1Q9HAY6 547 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 RYDENQ9NUL5 291 aaKnown RBP7.73□□□□□ -1.17
SYNE1-217ENST00000466159 NECAP2Q9NVZ3 263 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 C1orf123Q9NWV4 160 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 IGKV3D-15A0A087WSY6 115 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF503-AS2A6NEH8 195 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 FGF16O43320 207 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 XRCC2O43543 280 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 HLA-HP01893 362 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 GLI4P10075 376 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 DTYMKP23919 212 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 ITGA3P26006 1051 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 ECI1P42126 302 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 FXYD4P59646 89 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 NAAAQ02083 359 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 SPEM2Q0P670 501 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 DAZAP2Q15038 168 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-217ENST00000466159 OR1C1Q15619 314 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 SLC22A25Q6T423 547 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 DHRS11Q6UWP2 260 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 Q6ZPA2 131 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 FNDC9Q8TBE3 224 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 MRPL24Q96A35 216 aaKnown RBP7.73□□□□□ -1.17
SYNE1-217ENST00000466159 SPSB4Q96A44 273 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 AIFM2Q9BRQ8 373 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 TTTY12Q9BZ98 90 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 SLC5A7Q9GZV3 580 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 C12orf4Q9NQ89 552 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 CRIM1Q9NZV1 1036 aa7.73□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF708P17019 499 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 DEFA5Q01523 94 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 DCAF10Q5QP82 559 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 SLC25A26Q70HW3 274 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF611Q8N823 705 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 PRRG4Q9BZD6 226 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 PRDM14Q9GZV8 571 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 PIGMQ9H3S5 423 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 LDAHQ9H6V9 325 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 URB1O60287 2271 aaKnown RBP7.72□□□□□ -1.17
SYNE1-217ENST00000466159 OR7C1O76099 320 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-217ENST00000466159 SP9P0CG40 484 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 FAM157CP0CG43 387 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 PET100P0DJ07 73 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF728P0DKX0 622 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 HKR1P10072 659 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 CD59P13987 128 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 ATF4P18848 351 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-217ENST00000466159 FCGR2CP31995 323 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 RBM11P57052 281 aaKnown RBP7.72□□□□□ -1.17
SYNE1-217ENST00000466159 C3AR1Q16581 482 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 PHLDA2Q53GA4 152 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 GGNBP1Q5YKI7 109 aa7.72□□□□□ -1.17
SYNE1-217ENST00000466159 OR2A2Q6IF42 318 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms