RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 HLA-AP01891 365 aaKnown RBP4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 OPN1SWP03999 348 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 HIST1H1CP16403 213 aaKnown RBP4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 SDC1P18827 310 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 GRPRP30550 384 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 GABRA5P31644 462 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC18A1P54219 525 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 TAS2R30P59541 319 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 NCS1P62166 190 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 NTHL1P78549 312 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 LINC01620Q4KN68 170 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 ATP6AP1LQ52LC2 224 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 SOHLH1Q5JUK2 328 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 SERPINA11Q86U17 422 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 GPSM1Q86YR5 675 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 OR52I1Q8NGK6 324 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM174Q8WUU8 243 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 PELI1Q96FA3 418 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 MBOAT4Q96T53 435 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 S100A13Q99584 98 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 NDFIP1Q9BT67 221 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 MAP1LC3BQ9GZQ8 125 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 ENY2Q9NPA8 101 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 GPATCH2LQ9NWQ4 482 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 MRPL16Q9NX20 251 aaKnown RBP4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 POMT2Q9UKY4 750 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM96BQ9Y3D0 163 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 LSM4Q9Y4Z0 139 aaKnown RBP4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 HES2Q9Y543 173 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 R4GN57 208 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 VPS13AQ96RL7 3174 aa4.15□□□□□ -1.75
CCDC88A-209ENST00000456975 TINCRA0A1B0GVN0 87 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 GAGE12BA1L429 117 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 FRG2CA6NGY1 282 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 C9orf118A6NHY6 69 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM159BA6NKW6 160 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 CLDN24A6NM45 220 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 PTGESO14684 152 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SHC1P29353 583 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ARRB2P32121 409 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 CDAP32320 146 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TNFRSF4P43489 277 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 AMTP48728 403 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF133P52736 654 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 NDUFA6P56556 154 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TCTAP57738 103 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OR10A3P58181 314 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 EIF5AP63241 154 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 PAFAH1B2P68402 229 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 MFGE8Q08431 387 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ACSM2AQ08AH3 577 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OPCMLQ14982 345 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TBC1D28Q2M2D7 210 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF284Q2VY69 593 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 GGTA1PQ4G0N0 100 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 C1orf220Q5T0J3 134 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SPATA31B1PQ5VZV4 182 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ACSM2BQ68CK6 577 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 DNAJC24Q6P3W2 148 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 RPL22L1Q6P5R6 122 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 GLB1LQ6UWU2 654 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 BTNL8Q6UX41 500 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 PLXDC2Q6UX71 529 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 GOLGA7Q7Z5G4 137 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 IFNEQ86WN2 208 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 DND1Q8IYX4 353 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC39A11Q8N1S5 342 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SPICQ8N5J4 248 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OR56A4Q8NGH8 313 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OR6N2Q8NGY6 317 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SFXN5Q8TD22 340 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ART4Q93070 314 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 RNF183Q96D59 192 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 DUX3Q96PT4 197 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 UHRF2Q96PU4 802 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TRIB3Q96RU7 358 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 MIEN1Q9BRT3 115 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 GINS4Q9BRT9 223 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OR11A1Q9GZK7 315 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ZBP1Q9H171 429 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 CXCL16Q9H2A7 254 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 FNDC4Q9H6D8 234 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 PATZ1Q9HBE1 687 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 C3orf14Q9HBI5 128 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC17A5Q9NRA2 495 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ASF1BQ9NVP2 202 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OR51B2Q9Y5P1 312 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ACACBO00763 2458 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SPAARA0A1B0GVQ0 90 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 UNC119BA6NIH7 251 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC1A7O00341 560 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 HSD17B6O14756 317 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ERI3O43414 337 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ALOX12BO75342 701 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF217O75362 1048 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 HSBP1O75506 76 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 IGHG3P01860 377 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SMIM17P0DL12 118 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 HSD17B1P14061 328 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 RPS15AP62244 130 aaKnown RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms