RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CYYR1Q96J86 154 aa12.15□□□□□ -0.46
USP39-207ENST00000450066 TINAGL1Q9GZM7 467 aaPredicted RBP12.15□□□□□ -0.46
USP39-207ENST00000450066 PLK3Q9H4B4 646 aa12.15□□□□□ -0.46
USP39-207ENST00000450066 NPDC1Q9NQX5 325 aaPredicted RBP12.15□□□□□ -0.46
USP39-207ENST00000450066 NKIRAS2Q9NYR9 191 aa12.15□□□□□ -0.46
USP39-207ENST00000450066 FZR1Q9UM11 496 aa12.15□□□□□ -0.46
USP39-207ENST00000450066 TPRP12270 2363 aaKnown RBP12.15□□□□□ -0.47
USP39-207ENST00000450066 HEATR1Q9H583 2144 aaKnown RBP12.14□□□□□ -0.47
USP39-207ENST00000450066 PCNX1Q96RV3 2341 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 M0QYG6 137 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 MLNRO43193 412 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 PDCD6O75340 191 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 HNRNPCP07910 306 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP39-207ENST00000450066 TRAPPC2P0DI81 140 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 TRAPPC2BP0DI82 140 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 RPS23P62266 143 aaKnown RBP12.14□□□□□ -0.47
USP39-207ENST00000450066 DAZAP2Q15038 168 aaPredicted RBP12.14□□□□□ -0.47
USP39-207ENST00000450066 RBMS2Q15434 407 aaKnown RBP12.14□□□□□ -0.47
USP39-207ENST00000450066 OR52W1Q6IF63 320 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 AKAP14Q86UN6 197 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 SPERTQ8NA61 448 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 OR13G1Q8NGZ3 307 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 ZNF581Q9P0T4 197 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 PLEKHA6Q9Y2H5 1048 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 POLDIP2Q9Y2S7 368 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 ATP6V1G2-DDX39BF2Z307 99 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 H0YL77 283 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 TPD52L2O43399 206 aaKnown RBP12.14□□□□□ -0.47
USP39-207ENST00000450066 PEX14O75381 377 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 IGHV3-13P01766 116 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 THBDP07204 575 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 FUT3P21217 361 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 PTAFRP25105 342 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 CHRNB4P30926 498 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 PMELP40967 661 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 ASCL1P50553 236 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 ZNF154Q13106 437 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 RNASE10Q5GAN6 216 aaKnown RBP12.14□□□□□ -0.47
USP39-207ENST00000450066 Q6ZR03 302 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 HOGA1Q86XE5 327 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 SCCPDHQ8NBX0 429 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 TMEM171Q8WVE6 324 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 HPS1Q92902 700 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 SNAPC3Q92966 411 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 EMG1Q92979 244 aaKnown RBP12.14□□□□□ -0.47
USP39-207ENST00000450066 FAAP24Q9BTP7 215 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 POU2F3Q9UKI9 436 aa12.14□□□□□ -0.47
USP39-207ENST00000450066 ACACBO00763 2458 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 C7orf66A4D0T2 115 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 HMX3A6NHT5 357 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 OR7C1O76099 320 aaPredicted RBP12.13□□□□□ -0.47
USP39-207ENST00000450066 AMY2AP04746 511 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 ZNF735P0CB33 412 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 MSMPQ1L6U9 139 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 MPV17LQ2QL34 196 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 FBXL19-AS1Q494R0 122 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 LINC00596Q86U02 117 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 Q8IYB0 196 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 BATF2Q8N1L9 274 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 OR4K15Q8NH41 348 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 SULT4A1Q9BR01 284 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 CXXC4Q9H2H0 198 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 SCP2D1Q9UJQ7 156 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 FLVCR2Q9UPI3 526 aa12.13□□□□□ -0.47
USP39-207ENST00000450066 DISC1C4P0D8 188 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 H3BUI4 141 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 RHBDL1O75783 438 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 HRH1P35367 487 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 KLF3P57682 345 aaPredicted RBP12.12□□□□□ -0.47
USP39-207ENST00000450066 CD300CQ08708 224 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 IGFBP7Q16270 282 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 ACTBL2Q562R1 376 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 WFDC8Q8IUA0 241 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 BPIFB2Q8N4F0 458 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 NUP37Q8NFH4 326 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 RADILQ96JH8 1075 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 HS3ST6Q96QI5 342 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 GINS4Q9BRT9 223 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 SLC2A8Q9NY64 477 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 DUSP13Q9UII6 198 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 AK3Q9UIJ7 227 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 IGLV3-9A0A075B6K5 115 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 A0A0A6YYJ9 748 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 CDIPTO14735 213 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 ARPC1BO15143 372 aaKnown RBP12.12□□□□□ -0.47
USP39-207ENST00000450066 PRAF2O60831 178 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 ACAA1P09110 424 aaPredicted RBP12.12□□□□□ -0.47
USP39-207ENST00000450066 PRKACAP17612 351 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 MECP2P51608 486 aaKnown RBP12.12□□□□□ -0.47
USP39-207ENST00000450066 MRPS15P82914 257 aaKnown RBP12.12□□□□□ -0.47
USP39-207ENST00000450066 MZT1Q08AG7 82 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 ZMYND11Q15326 602 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 C11orf91Q3C1V1 193 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 IDO2Q6ZQW0 420 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 FAM58AQ8N1B3 248 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 BEST4Q8NFU0 473 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 ZNF488Q96MN9 340 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 SLC6A7Q99884 636 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 PRRT1Q99946 306 aa12.12□□□□□ -0.47
USP39-207ENST00000450066 SLC25A21Q9BQT8 299 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms