RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MTCH2Q9Y6C9 303 aa10.4□□□□□ -0.74
MSH6-204ENST00000445503 IFNA5P01569 189 aa10.4□□□□□ -0.75
MSH6-204ENST00000445503 SLC25A47Q6Q0C1 308 aa10.4□□□□□ -0.75
MSH6-204ENST00000445503 AQP10Q96PS8 301 aa10.4□□□□□ -0.75
MSH6-204ENST00000445503 OCSTAMPQ9BR26 566 aa10.4□□□□□ -0.75
MSH6-204ENST00000445503 SERPINE2P07093 398 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 ZNF32P17041 273 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 GDF1P27539 372 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 POLR2GP62487 172 aaKnown RBP eCLIP10.39□□□□□ -0.75
MSH6-204ENST00000445503 HFEQ30201 348 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 SNAI3Q3KNW1 292 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 MRPL21Q7Z2W9 205 aaKnown RBP10.39□□□□□ -0.75
MSH6-204ENST00000445503 OSR2Q8N2R0 312 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 OR5T1Q8NG75 326 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 UBALD1Q8TB05 177 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 ADAMTS17Q8TE56 1095 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 HAS2Q92819 552 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 CPNE4Q96A23 557 aaPredicted RBP10.39□□□□□ -0.75
MSH6-204ENST00000445503 NAA60Q9H7X0 242 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 CACNA1DQ01668 2161 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 CCL3P10147 92 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 NCMAPQ5T1S8 102 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 TMEM123Q8N131 208 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 SPIN2AQ99865 258 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 SPIN2BQ9BPZ2 258 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 CYTL1Q9NRR1 136 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 FAM86C1Q9NVL1 165 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 OCIAD1Q9NX40 245 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 P4HTMQ9NXG6 502 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 ZNF724A8MTY0 619 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 CTSDP07339 412 aaPredicted RBP10.39□□□□□ -0.75
MSH6-204ENST00000445503 CCL2P13500 99 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 HLA-GP17693 338 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 NOVA1P51513 510 aaKnown RBP10.39□□□□□ -0.75
MSH6-204ENST00000445503 SUPT4H1P63272 117 aaKnown RBP10.39□□□□□ -0.75
MSH6-204ENST00000445503 TLE1Q04724 770 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 HMGN3Q15651 99 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 CEACAM16Q2WEN9 425 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 SHEQ5VZ18 495 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 ZNF561Q8N587 486 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 POC1BQ8TC44 478 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 SHDQ96IW2 340 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 IP6K3Q96PC2 410 aa10.39□□□□□ -0.75
MSH6-204ENST00000445503 C2orf16Q68DN1 1984 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 AQP7P3A6NL99 342 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 H7C1Q1 480 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 MSTNO14793 375 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 ECI1P42126 302 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 SULT1A2P50226 295 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 LYSMD4Q5XG99 296 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 KMT5CQ86Y97 462 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 CMTM1Q8IZ96 169 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 SLC39A7Q92504 469 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 SH3BGRL3Q9H299 93 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 PCDH15Q96QU1 1955 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 HS3ST1O14792 307 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 SRSF10O75494 262 aaKnown RBP10.38□□□□□ -0.75
MSH6-204ENST00000445503 MBPP02686 304 aaPredicted RBP10.38□□□□□ -0.75
MSH6-204ENST00000445503 H2AFB1P0C5Y9 115 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 TCN2P20062 427 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 RBMS3Q6XE24 437 aaKnown RBP10.38□□□□□ -0.75
MSH6-204ENST00000445503 BEND4Q6ZU67 534 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 DPPA2Q7Z7J5 298 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 RDH5Q92781 318 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 ZNF837Q96EG3 531 aaPredicted RBP10.38□□□□□ -0.75
MSH6-204ENST00000445503 ZFP92A6NM28 416 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 GPR137BO60478 399 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 DHRS7BQ6IAN0 325 aaPredicted RBP10.38□□□□□ -0.75
MSH6-204ENST00000445503 CALHM2Q9HA72 323 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 SLC2A9Q9NRM0 540 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 OSGIN2Q9Y236 505 aa10.38□□□□□ -0.75
MSH6-204ENST00000445503 DOCK7Q96N67 2140 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 GJE1A6NN92 205 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 FGF16O43320 207 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 IFNA4P05014 189 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 AADACL3Q5VUY0 350 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 OR1F12Q8NHA8 337 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 MRPL13Q9BYD1 178 aaKnown RBP10.37□□□□□ -0.75
MSH6-204ENST00000445503 CHST5Q9GZS9 411 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 WNT16Q9UBV4 365 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 LOC102725191A0A1B0GVB3 256 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 EIF3GO75821 320 aaKnown RBP eCLIP10.37□□□□□ -0.75
MSH6-204ENST00000445503 VAMP5O95183 116 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 RPL23AP62750 156 aaKnown RBP10.37□□□□□ -0.75
MSH6-204ENST00000445503 QRFPP83859 136 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 ESPL1Q14674 2120 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 TSC22D1Q15714 1073 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 LRFN1Q9P244 771 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 F8VVB4 439 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 F8VWA3 439 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 HLA-HP01893 362 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 FABP1P07148 127 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 EDN3P14138 238 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 AADACP22760 399 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 FOLR3P41439 243 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 MRPS34P82930 218 aaKnown RBP10.37□□□□□ -0.75
MSH6-204ENST00000445503 C4orf17Q53FE4 359 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 WIPI1Q5MNZ9 446 aaPredicted RBP10.37□□□□□ -0.75
MSH6-204ENST00000445503 SKA3Q8IX90 412 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 MKXQ8IYA7 352 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms