RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 ZNF92Q03936 586 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 SRSF7Q16629 238 aaKnown RBP eCLIP9.03□□□□□ -0.96
CD44-210ENST00000434472 GGNBP1Q5YKI7 109 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 SLC22A25Q6T423 547 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 COLCA1Q6ZS62 124 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.03□□□□□ -0.96
CD44-210ENST00000434472 SAXO1Q8IYX7 474 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 FBXL14Q8N1E6 418 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 LRTM2Q8N967 370 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 Q8NFD4 153 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 OR2M7Q8NG81 312 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 OR10AD1Q8NGE0 317 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 OR51F2Q8NH61 342 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 ADAMTS17Q8TE56 1095 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 TMED6Q8WW62 240 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 NARS2Q96I59 477 aaKnown RBP9.03□□□□□ -0.96
CD44-210ENST00000434472 PRRX2Q99811 253 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 NKX6-2Q9C056 277 aaPredicted RBP9.03□□□□□ -0.96
CD44-210ENST00000434472 MS4A7Q9GZW8 240 aaPredicted RBP9.03□□□□□ -0.96
CD44-210ENST00000434472 ACKR4Q9NPB9 350 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 PRDM6Q9NQX0 595 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 FAM86C1Q9NVL1 165 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 ST3GAL6Q9Y274 331 aa9.03□□□□□ -0.96
CD44-210ENST00000434472 SPTBN5Q9NRC6 3674 aaKnown RBP9.03□□□□□ -0.96
CD44-210ENST00000434472 IGKV1-12A0A0C4DH73 117 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 PMS2P1A4D2B8 440 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 PINLYPA6NC86 204 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 K7EPK0 472 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 CDK2AP1O14519 115 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 GEMIN2O14893 280 aaKnown RBP9.02□□□□□ -0.96
CD44-210ENST00000434472 KCNAB3O43448 404 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 DEDDO75618 318 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 JTBO76095 146 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 ATG12O94817 140 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 IGKV1D-12P01611 117 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 FAM157CP0CG43 387 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 EDN3P14138 238 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 ZNF708P17019 499 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 PIGPP57054 158 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 HERV-K104P61576 105 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 ARF1P84077 181 aaKnown RBP9.02□□□□□ -0.96
CD44-210ENST00000434472 PJVKQ0ZLH3 352 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 TMEM187Q14656 261 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 RSPO4Q2I0M5 234 aaPredicted RBP9.02□□□□□ -0.96
CD44-210ENST00000434472 SMUG1Q53HV7 270 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 TSPO2Q5TGU0 170 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 TMEM164Q5U3C3 297 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 FAM122CQ6P4D5 195 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 FAM185AQ8N0U4 392 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 LGI3Q8N145 548 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 SVBPQ8N300 66 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 FAM71E2Q8N5Q1 922 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 FGFBP3Q8TAT2 258 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 ABHD3Q8WU67 409 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 CYYR1Q96J86 154 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 OPA3Q9H6K4 179 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 TAF9BQ9HBM6 251 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 PLSCR2Q9NRY7 297 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 LPAR3Q9UBY5 353 aa9.02□□□□□ -0.96
CD44-210ENST00000434472 ZNF629Q9UEG4 869 aaPredicted RBP9.02□□□□□ -0.96
CD44-210ENST00000434472 ZNF724A8MTY0 619 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 ZNF705EA8MWA4 302 aaPredicted RBP9.02□□□□□ -0.97
CD44-210ENST00000434472 E5RGE8 158 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 ZNF587BE7ETH6 402 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 H7C1Q1 480 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 DNASE2O00115 360 aaPredicted RBP9.02□□□□□ -0.97
CD44-210ENST00000434472 MSTNO14793 375 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 FCGR2CP31995 323 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 OPRM1P35372 400 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 ARR3P36575 388 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 LHX2P50458 406 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 RRADP55042 308 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 SRPXP78539 464 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 PIGYQ3MUY2 71 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 LIAT1Q6ZQX7 453 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 Q6ZS49 121 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 RTN4IP1Q8WWV3 396 aaPredicted RBP9.02□□□□□ -0.97
CD44-210ENST00000434472 TOMM40LQ969M1 308 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 MRPL24Q96A35 216 aaKnown RBP9.02□□□□□ -0.97
CD44-210ENST00000434472 MOB3AQ96BX8 217 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 ZNF845Q96IR2 970 aaPredicted RBP9.02□□□□□ -0.97
CD44-210ENST00000434472 SMIM8Q96KF7 97 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 IP6K3Q96PC2 410 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 TSNAXQ99598 290 aaKnown RBP9.02□□□□□ -0.97
CD44-210ENST00000434472 RSRP1Q9BUV0 290 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 ZNF703Q9H7S9 590 aaPredicted RBP9.02□□□□□ -0.97
CD44-210ENST00000434472 OR2S2Q9NQN1 319 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 NSG2Q9Y328 171 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 STARD10Q9Y365 291 aa9.02□□□□□ -0.97
CD44-210ENST00000434472 MPLP40238 635 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 SULT1A2P50226 295 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 C10orf91Q5T1B1 145 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 GPR157Q5UAW9 335 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 DPPA2Q7Z7J5 298 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 MKXQ8IYA7 352 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 SPAG16Q8N0X2 631 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 BHLHE23Q8NDY6 225 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 APOBEC3DQ96AK3 386 aaPredicted RBP9.01□□□□□ -0.97
CD44-210ENST00000434472 C18orf12Q96KH6 178 aa9.01□□□□□ -0.97
CD44-210ENST00000434472 REPIN1Q9BWE0 567 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms