RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ALG6Q9Y672 507 aa3.26□□□□□ -1.89
HMGB3-203ENST00000430118 NAV3Q8IVL0 2385 aa3.26□□□□□ -1.89
HMGB3-203ENST00000430118 NIPBLQ6KC79 2804 aaeCLIP3.26□□□□□ -1.89
HMGB3-203ENST00000430118 DOCK9Q9BZ29 2069 aa3.26□□□□□ -1.89
HMGB3-203ENST00000430118 UNC13CQ8NB66 2214 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 VPS13CQ709C8 3753 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 TRAV17A0A0B4J275 112 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 IGHV3-16A0A0C4DH30 117 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 GLYATL1P3A0A0U1RQE8 302 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 BTBD17A6NE02 478 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 TLCD2A6NGC4 264 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 A6NIZ1 184 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 OR2AT4A6NND4 320 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 B4DXG7 233 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 E7EQ34 232 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 SOCS3O14543 225 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 PRMT5O14744 637 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 MYL12BO14950 172 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 KDELR3O43731 214 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 SLC19A2O60779 497 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 LYPLA1O75608 230 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 GATBO75879 557 aaKnown RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 GADD45GO95257 159 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CLDN9O95484 217 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 NR2C1P13056 603 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 HIST1H1BP16401 226 aaKnown RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 MYL12AP19105 171 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 BGNP21810 368 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 MMP11P24347 488 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 PSMB6P28072 239 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 DDTP30046 118 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 S100A11P31949 105 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CD80P33681 288 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 POLR2IP36954 125 aaKnown RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 MAP3K8P41279 467 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CDKN2CP42773 168 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 BDKRB1P46663 353 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 KLK7P49862 253 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 RAB5CP51148 216 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 XKP51811 444 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 HNRNPA3P51991 378 aaKnown RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 PRRX1P54821 245 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 KRTAP10-9P60411 292 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 RAP1BP61224 184 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 ARF6P62330 175 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 RBX1P62877 108 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CSNK1G2P78368 415 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 ARG2P78540 354 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 REEP5Q00765 189 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 TNFRSF9Q07011 255 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 BST1Q10588 318 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 TAF1AQ15573 450 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 NDUFA9Q16795 377 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 C6orf226Q5I0X4 101 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 GPRC6AQ5T6X5 926 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 FAM219BQ5XKK7 198 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 MED27Q6P2C8 311 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 ZNF613Q6PF04 617 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 RASSF6Q6ZTQ3 369 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CYS1Q717R9 158 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 OOSP2Q86WS3 158 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 FAM71AQ8IYT1 594 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 TMEM123Q8N131 208 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 OR8D4Q8NGM9 314 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 OR5M1Q8NGP8 315 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 OR2T4Q8NH00 348 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 M1APQ8TC57 530 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 ZNF431Q8TF32 576 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 ACOT11Q8WXI4 607 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 RORBQ92753 470 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CREB3L1Q96BA8 519 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 S100PBPQ96BU1 408 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 TM4SF18Q96CE8 201 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CXorf40BQ96DE9 158 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 AURKBQ96GD4 344 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 NOL4LQ96MY1 436 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 RBP7Q96R05 134 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 SDHCQ99643 169 aaPredicted RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CHCHD5Q9BSY4 110 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 POTEKPQ9BYX7 375 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 ACTR6Q9GZN1 396 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 DCSTAMPQ9H295 470 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 PPDPFQ9H3Y8 114 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 REEP4Q9H6H4 257 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 KIR3DX1Q9H7L2 352 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CACYBPQ9HB71 228 aaKnown RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 SIRT7Q9NRC8 400 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 CTSZQ9UBR2 303 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 SAMD4AQ9UPU9 718 aaKnown RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 PDE10AQ9Y233 779 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 BTRCQ9Y297 605 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 NPTNQ9Y639 398 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 PCM1Q15154 2024 aa3.25□□□□□ -1.89
HMGB3-203ENST00000430118 TNRC6AQ8NDV7 1962 aaKnown RBP3.25□□□□□ -1.89
HMGB3-203ENST00000430118 IGHV2-70DA0A0C4DH43 119 aa3.24□□□□□ -1.89
HMGB3-203ENST00000430118 A0A0J9YYE9 177 aa3.24□□□□□ -1.89
HMGB3-203ENST00000430118 TEX48A0A1B0GUV7 120 aa3.24□□□□□ -1.89
HMGB3-203ENST00000430118 SERTM2A0A1B0GWG4 89 aa3.24□□□□□ -1.89
HMGB3-203ENST00000430118 TMEM218A2RU14 115 aa3.24□□□□□ -1.89
HMGB3-203ENST00000430118 C7orf66A4D0T2 115 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms