RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 WARS2Q9UGM6 360 aaKnown RBP2.08□□□□□ -2.08
VPS13A-208ENST00000423463 PURGQ9UJV8 347 aaKnown RBP2.08□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM14AQ9Y6G1 99 aa2.08□□□□□ -2.08
VPS13A-208ENST00000423463 DSCAMO60469 2012 aa2.08□□□□□ -2.08
VPS13A-208ENST00000423463 RAI1Q7Z5J4 1906 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-208ENST00000423463 HEATR1Q9H583 2144 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 AKAP6Q13023 2319 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 CCDC182A6NF36 153 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SNTNA6NMZ2 147 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF878C9JN71 531 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 E9PQ18 207 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 F5H5K5 113 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 M0R135 149 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 EI24O14681 340 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 PHYHO14832 338 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SPRY1O43609 319 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 PRKYO43930 277 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MPZL2O60487 215 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF254O75437 659 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 GAS8-AS1O95177 125 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 H2BFMP0C1H6 154 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 CLUP10909 449 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ALOX5APP20292 161 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 GIFP27352 417 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 EPHA2P29317 976 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 POLR2IP36954 125 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MPV17P39210 176 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 DDOSTP39656 456 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ALDH3B1P43353 468 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MMP15P51511 669 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 PRKXP51817 358 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM33P57088 247 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SNRPGP62308 76 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 LOXL1Q08397 574 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 PSG7Q13046 419 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 TNK1Q13470 666 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 GGTLC2Q14390 218 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MEDAGQ5VYS4 303 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 RFPL4BQ6ZWI9 263 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 DPY19L4Q7Z388 723 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 CENPVQ7Z7K6 275 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 BIVMQ86UB2 503 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ERI1Q8IV48 349 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 GID4Q8IVV7 300 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 PACRGLQ8N7B6 248 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF283Q8N7M2 679 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 C10orf105Q8TEF2 133 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 THEM6Q8WUY1 208 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 RNF133Q8WVZ7 376 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ASB17Q8WXJ9 295 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF799Q96GE5 643 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 IL4I1Q96RQ9 567 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SLC29A1Q99808 456 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 COPS4Q9BT78 406 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 EGLN1Q9GZT9 426 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 OPA3Q9H6K4 179 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SLA2Q9H6Q3 261 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 PTTG3PQ9NZH4 202 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 FZR1Q9UM11 496 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 NOP16Q9Y3C1 178 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 COL12A1Q99715 3063 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ABCA12Q86UK0 2595 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 USF3Q68DE3 2245 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SETXQ7Z333 2677 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 FAM172BPA6NC97 362 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 TRIM64A6NGJ6 449 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 TRIM64BA6NI03 449 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 IQCF6A8MYZ5 107 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF670-ZNF695F2Z2N8 137 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 XRCC2O43543 280 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 TIMM8AO60220 97 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 GPR137BO60478 399 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SELENOFO60613 162 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 IGHV1-46P01743 117 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 LYNP07948 512 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 CD55P08174 381 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SBK2P0C263 348 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 OR2T7P0C7T2 308 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ANPEPP15144 967 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ACHEP22303 614 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 USF1P22415 310 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 CFL1P23528 166 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 HSD11B1P28845 292 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 HTR1FP30939 366 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 OPRL1P41146 370 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 NAA10P41227 235 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 RPS27P42677 84 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 CRYBB2P43320 205 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SLC3A1Q07837 685 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MAD2L1BPQ15013 274 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SNCBQ16143 134 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ALKBH6Q3KRA9 238 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SPATA46Q5T0L3 261 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 TTC23Q5W5X9 447 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MRPL21Q7Z2W9 205 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 NAA40Q86UY6 237 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 EGFL6Q8IUX8 553 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZCCHC24Q8N2G6 241 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF555Q8NEP9 628 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 Q8NFD4 153 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms