RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 GAFA1Q96PS6 74 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 DERL3Q96Q80 235 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 OR14A2Q96R54 314 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 S100A13Q99584 98 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 TMPRSS13Q9BYE2 586 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 FAM234AQ9H0X4 552 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 SLITRK2Q9H156 845 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 MTCH1Q9NZJ7 389 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 ZNF222Q9UK12 451 aa12.17□□□□□ -0.46
LIMS1-206ENST00000414829 NSD1Q96L73 2696 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-206ENST00000414829 ZANQ9Y493 2812 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 KIR2DS1A0A191URI9 304 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 ZNF780AO75290 641 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-206ENST00000414829 ARL6IP5O75915 188 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 KDM4BO94953 1096 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 CHRM2P08172 466 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 TMEM225BP0DP42 221 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 CPEP16870 476 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 PRDX2P32119 198 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 ZNF93P35789 620 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-206ENST00000414829 RBMXP38159 391 aaKnown RBP12.16□□□□□ -0.46
LIMS1-206ENST00000414829 CAPZA1P52907 286 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 RPS11P62280 158 aaKnown RBP eCLIP12.16□□□□□ -0.46
LIMS1-206ENST00000414829 HOXA4Q00056 320 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-206ENST00000414829 KCTD21Q4G0X4 260 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 ARMCX4Q5H9R4 360 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 FAM58AQ8N1B3 248 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 TMEM185AQ8NFB2 350 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 OR5T2Q8NGG2 359 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 OR13C5Q8NGS8 318 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 TNFAIP8L1Q8WVP5 186 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 SGCDQ92629 289 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 ZNF488Q96MN9 340 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 MGLLQ99685 303 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 TMED9Q9BVK6 235 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 FAM192AQ9GZU8 254 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 TCF7L1Q9HCS4 588 aa12.16□□□□□ -0.46
LIMS1-206ENST00000414829 IGFBP3P17936 291 aaPredicted RBP12.15□□□□□ -0.46
LIMS1-206ENST00000414829 GABRA5P31644 462 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 TGFBR2P37173 567 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 MTNR1BP49286 362 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 ZP1P60852 638 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 PAX2Q02962 417 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 PAX8Q06710 450 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 GPR176Q14439 515 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 ZNF146Q15072 292 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 ACSM3Q53FZ2 586 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 METTL11BQ5VVY1 283 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 LIPKQ5VXJ0 399 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 ZNF773Q6PK81 442 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 BTN2A1Q7KYR7 527 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 SATL1Q86VE3 508 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 KIR3DL3Q8N743 410 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 CHST4Q8NCG5 386 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 OR51A2Q8NGJ7 313 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 OR5D18Q8NGL1 313 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 OR5D13Q8NGL4 314 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 C8orf46Q8TAG6 207 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 RFT1Q96AA3 541 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 DACT3Q96B18 629 aaPredicted RBP12.15□□□□□ -0.46
LIMS1-206ENST00000414829 SEH1LQ96EE3 360 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 VCX3AQ9NNX9 186 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 HMG20AQ9NP66 347 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 ACOT13Q9NPJ3 140 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 OR14J1Q9UGF5 321 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 RPUSD1Q9UJJ7 312 aaKnown RBP12.15□□□□□ -0.46
LIMS1-206ENST00000414829 LRRC42Q9Y546 428 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 KPTNQ9Y664 436 aa12.15□□□□□ -0.46
LIMS1-206ENST00000414829 FN1P02751 2386 aaKnown RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 C22orf46C9J442 243 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 SH2D1BO14796 132 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 SPRY1O43609 319 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 RGS9O75916 674 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 HAND1O96004 215 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 CSTBP04080 98 aaKnown RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 NDUFB7P17568 137 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 PRKACAP17612 351 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 BCL3P20749 454 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 PTGFRP43088 359 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 BPIFB3P59826 476 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 FGF12P61328 243 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 BLMHQ13867 455 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 RSU1Q15404 277 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 DGUOKQ16854 277 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 HSD17B12Q53GQ0 312 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 ASCC1Q8N9N2 400 aaKnown RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 OR52N4Q8NGI2 321 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 H1FXQ92522 213 aaKnown RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 FOXRED1Q96CU9 486 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 SPACA5Q96QH8 159 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 UQCC2Q9BRT2 126 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 DCTN5Q9BTE1 182 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 METTL9Q9H1A3 318 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 ELL3Q9HB65 397 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 EXOSC4Q9NPD3 245 aaKnown RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 NOX4Q9NPH5 578 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 MMP26Q9NRE1 261 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 RBFOX1Q9NWB1 397 aaKnown RBP12.14□□□□□ -0.47
LIMS1-206ENST00000414829 IL36GQ9NZH8 169 aa12.14□□□□□ -0.47
LIMS1-206ENST00000414829 METRNQ9UJH8 293 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms