RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 DYRK2Q92630 601 aa11.75□□□□□ -0.53
PTPRF-202ENST00000372405 ADAT1Q9BUB4 502 aaKnown RBP11.75□□□□□ -0.53
PTPRF-202ENST00000372405 BCL2L14Q9BZR8 327 aa11.75□□□□□ -0.53
PTPRF-202ENST00000372405 AK3Q9UIJ7 227 aa11.75□□□□□ -0.53
PTPRF-202ENST00000372405 ZNF221Q9UK13 617 aa11.75□□□□□ -0.53
PTPRF-202ENST00000372405 ADGRG4Q8IZF6 3080 aa11.75□□□□□ -0.53
PTPRF-202ENST00000372405 IGKV1D-8A0A087WSZ0 117 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 A0A1B0GUH1 482 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 PMP2P02689 132 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 SELEP16581 610 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 KITLGP21583 273 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 FABP6P51161 128 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 FGF12P61328 243 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 CD83Q01151 205 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 IL24Q13007 206 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 MEF2DQ14814 521 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 FCN2Q15485 313 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 C3orf36Q3SXR2 165 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 MBNL2Q5VZF2 373 aaKnown RBP11.74□□□□□ -0.53
PTPRF-202ENST00000372405 Q6ZR03 302 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 SLC36A1Q7Z2H8 476 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 OR4K15Q8NH41 348 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 MUCL1Q96DR8 90 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 SEC22CQ9BRL7 303 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 CHST6Q9GZX3 395 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 PCDHB16Q9NRJ7 776 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 SLC2A8Q9NY64 477 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 TUBG1P23258 451 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 CBX5P45973 191 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 SNU13P55769 128 aaKnown RBP11.74□□□□□ -0.53
PTPRF-202ENST00000372405 ARL6IP1Q15041 203 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 NHLRC3Q5JS37 347 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 GLDNQ6ZMI3 551 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-202ENST00000372405 Q6ZPA2 131 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 MKXQ8IYA7 352 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 OR8G5Q8NG78 346 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 OR11H7Q8NGC8 314 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 VKORC1Q9BQB6 163 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 ST6GALNAC5Q9BVH7 336 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 RTL8AQ9BWD3 113 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 PKIBQ9C010 78 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 TUBG2Q9NRH3 451 aa11.74□□□□□ -0.53
PTPRF-202ENST00000372405 PKD1L2Q7Z442 2459 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 PLCE1Q9P212 2302 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 IGHV3-64DA0A0J9YX35 117 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 MED19A0JLT2 244 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-202ENST00000372405 TRAPPC2LH3BP13 241 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 J3QT63 122 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 PDCD6O75340 191 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 TBPP20226 339 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 NKX2-5P52952 324 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-202ENST00000372405 ZNF154Q13106 437 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 ZNF718Q3SXZ3 478 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 SCGB2B2Q4G0G5 96 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 UNQ6126/PRO20091Q6UXV3 157 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 SCCPDHQ8NBX0 429 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 DMRTB1Q96MA1 342 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 MICU1Q9BPX6 476 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 ELOVL5Q9NYP7 299 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 PLEKHA6Q9Y2H5 1048 aa11.73□□□□□ -0.53
PTPRF-202ENST00000372405 NBASA2RRP1 2371 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 LRP5LA4QPB2 252 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 OR2AT4A6NND4 320 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 DISC1C4P0D8 188 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 PRAF2O60831 178 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 OR7C1O76099 320 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-202ENST00000372405 RLN1P04808 185 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 CXCL3P19876 107 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 NKX6-1P78426 367 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-202ENST00000372405 OR8G1Q15617 311 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 VAX1Q5SQQ9 334 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 LRP11Q86VZ4 500 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 OR52B4Q8NGK2 314 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 CAPSLQ8WWF8 208 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 SLC25A21Q9BQT8 299 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-202ENST00000372405 MED28Q9H204 178 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 FN3KRPQ9HA64 309 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 TMEM100Q9NV29 134 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 SCP2D1Q9UJQ7 156 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 VSIG4Q9Y279 399 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 MEMO1Q9Y316 297 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 TRGV8A0A0C4DH27 118 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 UBE2QL1A1L167 161 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 C16orf97H3BN30 126 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 IL5P05113 134 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 AMY2BP19961 511 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 FUT3P21217 361 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 DUSP1P28562 367 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 LY6DQ14210 128 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 ATPAF1Q5TC12 328 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-202ENST00000372405 METTL11BQ5VVY1 283 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 CD276Q5ZPR3 534 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 RND1Q92730 232 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 POM121Q96HA1 1249 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 MED30Q96HR3 178 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 PRRT1Q99946 306 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 MSL2Q9HCI7 577 aa11.72□□□□□ -0.53
PTPRF-202ENST00000372405 ZNF701Q9NV72 531 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-202ENST00000372405 NOP16Q9Y3C1 178 aaKnown RBP11.72□□□□□ -0.53
PTPRF-202ENST00000372405 CHD3Q12873 2000 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms