RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 DNAJB9Q9UBS3 223 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 PCDHGB5Q9Y5G0 923 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 MEX3AA1L020 520 aaKnown RBP11.01□□□□□ -0.65
VPS29-201ENST00000360579 H0YHG0 523 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 H3BN98 237 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 PSMD9O00233 223 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 ZNF254O75437 659 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 MYCNOSP40205 109 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 MAGEA2P43356 314 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 RPL23AP62750 156 aaKnown RBP11.01□□□□□ -0.65
VPS29-201ENST00000360579 CBX1P83916 185 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 IL24Q13007 206 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 ZNF829Q3KNS6 432 aaPredicted RBP11.01□□□□□ -0.65
VPS29-201ENST00000360579 SLC35D3Q5M8T2 416 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 TMEM42Q69YG0 159 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 OR52W1Q6IF63 320 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 PLBD1Q6P4A8 553 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 C10orf99Q6UWK7 81 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 ASRGL1Q7L266 308 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 RTN4RL2Q86UN3 420 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 ZNF596Q8TC21 504 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 CREB3L1Q96BA8 519 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 TEAD3Q99594 435 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 CCDC134Q9H6E4 229 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 PAPOLBQ9NRJ5 636 aaKnown RBP11.01□□□□□ -0.65
VPS29-201ENST00000360579 ZFP57Q9NU63 452 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 NUFIP1Q9UHK0 495 aaKnown RBP11.01□□□□□ -0.65
VPS29-201ENST00000360579 KLHDC2Q9Y2U9 406 aa11.01□□□□□ -0.65
VPS29-201ENST00000360579 LEUTXA8MZ59 168 aa11□□□□□ -0.65
VPS29-201ENST00000360579 E2F6O75461 281 aa11□□□□□ -0.65
VPS29-201ENST00000360579 CD24P25063 80 aa11□□□□□ -0.65
VPS29-201ENST00000360579 PEX2P28328 305 aa11□□□□□ -0.65
VPS29-201ENST00000360579 CEACAM3P40198 252 aa11□□□□□ -0.65
VPS29-201ENST00000360579 BDH1Q02338 343 aa11□□□□□ -0.65
VPS29-201ENST00000360579 EDDM3AQ14507 147 aa11□□□□□ -0.65
VPS29-201ENST00000360579 C9orf152Q5JTZ5 239 aa11□□□□□ -0.65
VPS29-201ENST00000360579 SLX4IPQ5VYV7 408 aa11□□□□□ -0.65
VPS29-201ENST00000360579 TCF23Q7RTU1 214 aa11□□□□□ -0.65
VPS29-201ENST00000360579 OR2W3Q7Z3T1 314 aa11□□□□□ -0.65
VPS29-201ENST00000360579 BATF2Q8N1L9 274 aa11□□□□□ -0.65
VPS29-201ENST00000360579 IQCF1Q8N6M8 205 aa11□□□□□ -0.65
VPS29-201ENST00000360579 BCAS4Q8TDM0 211 aa11□□□□□ -0.65
VPS29-201ENST00000360579 TFAP2CQ92754 450 aa11□□□□□ -0.65
VPS29-201ENST00000360579 YIPF3Q9GZM5 350 aa11□□□□□ -0.65
VPS29-201ENST00000360579 REEP1Q9H902 201 aa11□□□□□ -0.65
VPS29-201ENST00000360579 GPR173Q9NS66 373 aa11□□□□□ -0.65
VPS29-201ENST00000360579 ARGLU1Q9NWB6 273 aaPredicted RBP11□□□□□ -0.65
VPS29-201ENST00000360579 SAMHD1Q9Y3Z3 626 aaKnown RBP11□□□□□ -0.65
VPS29-201ENST00000360579 DNAH1Q9P2D7 4330 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 HUWE1Q7Z6Z7 4374 aaKnown RBP10.99□□□□□ -0.65
VPS29-201ENST00000360579 DHRS7CA6NNS2 312 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 NUDT19A8MXV4 375 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 AMY1AP04745 511 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 AMY2AP04746 511 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 RPS7P62081 194 aaKnown RBP10.99□□□□□ -0.65
VPS29-201ENST00000360579 ESRRGP62508 458 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 ROM1Q03395 351 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 PPP1R8Q12972 351 aaKnown RBP10.99□□□□□ -0.65
VPS29-201ENST00000360579 DOC2BQ14184 412 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 GK3PQ14409 553 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 SNAPC1Q16533 368 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 SPATS1Q496A3 300 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 ZNF679Q8IYX0 411 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 PGAM4Q8N0Y7 254 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 ABHD12Q8N2K0 398 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 CHPT1Q8WUD6 406 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 ASB17Q8WXJ9 295 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 CEP19Q96LK0 163 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 P2RX4Q99571 388 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 MOB1AQ9H8S9 216 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 SEBOXQ9HB31 216 aaPredicted RBP10.99□□□□□ -0.65
VPS29-201ENST00000360579 TAS2R1Q9NYW7 299 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 GLS2Q9UI32 602 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 UBE2J1Q9Y385 318 aaPredicted RBP10.99□□□□□ -0.65
VPS29-201ENST00000360579 LSM4Q9Y4Z0 139 aaKnown RBP10.99□□□□□ -0.65
VPS29-201ENST00000360579 TMEM14AQ9Y6G1 99 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 U3KQV3 271 aa10.99□□□□□ -0.65
VPS29-201ENST00000360579 HMGN1P05114 100 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 MNDAP41218 407 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 RIDAP52758 137 aaKnown RBP10.98□□□□□ -0.65
VPS29-201ENST00000360579 GRK1Q15835 563 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 NKAPLQ5M9Q1 402 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 CASC10Q5T4H9 136 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 OR2T5Q6IEZ7 315 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 CCDC144NLQ6NUI1 221 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 C8orf86Q6ZUL3 223 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 TRAPPC6BQ86SZ2 158 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 ANGPTL5Q86XS5 388 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 ENTHD1Q8IYW4 607 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 COMMD1Q8N668 190 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 OR10G2Q8NGC3 310 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 OR2T29Q8NH02 315 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 MUC7Q8TAX7 377 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 CDRT15Q96T59 188 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 NIPSNAP1Q9BPW8 284 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 MYLK2Q9H1R3 596 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 GAL3ST2Q9H3Q3 398 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 MAGIXQ9H6Y5 334 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 HHLA2Q9UM44 414 aa10.98□□□□□ -0.65
VPS29-201ENST00000360579 SLC7A11Q9UPY5 501 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms